XLOC_026815 (rhbdf1a)


Basic Information

Item Value
gene id XLOC_026815
gene name rhbdf1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54896331 ~ 54993027 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052145
ACTTACACTGAGCCGATCGCTTCTGctcggtgtgtgtgtgtcgtgcGCGCGTGGGAATGTACTCGCTTCTGCGTGGGGACAATCTTATGAACTGCTCTGCGATGTCTTAACATTGGATTTTATCAGCGAGAGCCTCAAGACGGAGAGACTTTGACATCTGCAGCTGTTTATTTTCTTGCGCCGCTTTAACGTTggacaaaatgaaataaatatacacaccCTCGATTTCATTTCTTCATAGGGTCCTGGAGACTTCAGCTGTTCGTTTTCCCTCTTCACGAAGTGCTTGAGAATCGAGTAAGGCTGGCAGGTCTAAGGAGACGCAGGCAGCATGGCTGAACTCAGACGCGACAGCACCAGCAGCCTGCAGCGCAAGAAGCCGCCATGGCTAAAACTGGACATTCCCACTGCTCACGTGTCTGTGGATGAGGTTCCTGCTTTTGTTCCGCCAGTGAAGAGGCAAGGTTTCCACCGCAGTGCCAGTATGCCAGTGGAGACTTCTCATTTCCACTCTCCCCAACGGGACATCATCGACCATCGGCGGGCTGCTTTCCAGCGCCAGTCTTCAATCACACAAACCATCAAGAGGGGCACGGCAGACTGGTTTGGGGTCAGTAAAGACGGCgacgccacacagaaatggcagaGGAAGAGCCTGCGACACTGCAGCCTACGCTACGGCAAGCTGAAACCTCAGGTGATCCGTGAGATGGAGCTGCCCAGCCAGGACAACATCTCTCTGACCAGCACGGAAACCCCACCACCTCTATACGTACCCTCATCCCAGCATGGCATGCAAAAGATTGTGGACCCGCTGGCTCGAGGACGTGCGTTCCGTATGGTGGAGGAGGTAGATGGATACAGCGTGCCCCAAACGCCCATCACACCTGGTGCTGCATCCATCTGCTCCTTCAACAGCTCGCGCTCAGGCCTGAACCGCATCCCGCGCAGACGCAAGCGCGAGTCTGTGGCCAAAATGAGCTTCAGGGCAGCGGCAGCTCTGGTCAAGGGTCGCTCGCTACGTGAAGGTACATTAAGACGAGCTCACAGGCGTAGCTTCACTCCTGCTAGCTTTATTGAGGAGGATGTGGTGGACTTCCCAGATGAACTGGACACTTCATTCTTTGCTCGGGACATCATGATGCACGAGGAGATGTCCACCTTTCATGATGAGGTGTTTGAGTCTCCGTCAGACTCCACCATGAAGGATGTGGACAGTAAACAGCTGGATGAGTCGGAACTAACGGGCAGTGCACTGGACAAGAGCGAGCTGGAGAAAAGTCACTTAATGCTGCCTCTAGAGCGTGGCTGGCGGAAGGTAAAAGAGAAAACGCCAGCGCCCCCTAAAATCAGACTGAAGCAGGAGGTGGTGAGTGTGAACGGTCAGCGGAGAGGACAACGCATCGGCCTCCCCGTCAAGAAGCTCTTCGCCAGGGAGAAAAGACCCTATGGATTAGGCATGGTGGGAAAACTGACCAATCGGACATATCGAAAGCGCATTGACAGCTATGTCAAAAAGCAGATAGAGGACATGGATGACCACAGGCCTTTCTTCACATATTGGATAACATTCGTTCACATACTCATCACCATTCTGGCAGTGTGTATTTATGGCATTGCACCGGTGGGCTTCTCCCAGCATGAAACTGTGGATTCTGTCTTAAGAAATAAAGGCGTCTATGAAAATGTCAAATTTGTGCAGCAAGAGAACTTTTGGATTGGACCAAGTTCGGAGGCCCTGATTCACCTGGGAGCCAAATTCTCACCTTGTATGCGACGGGACAACCAGGTACatgaactgattaaaaaaaagcaGGAACTGGAGCGAAACTCTGCATGCTGCGTGCGAAACGACCGCTCGGGCTGTCTGCAGACCTCAGAGGAGGAATGCTCTAGCACTTTGGCCGTGTGGGTGAAATGGCCTCAGCATCCCAGCGTCCCTCAGCTGGACGGGGTGGCCAGGCAGCATGGCTCTGTGTGCCATCAGGACCCCAGGACGTGTACAGAGCCGGCATCAGTGTCTCCTCATGAATGGCCTGATGACATCACCAAATGGCCGATCTGCACCAAATATAATTCTGGGAACCACACCAATCTGCCTCATATTGACTGTACTATCACCGGCCGGCCGTGCTGCATCGGCACTAAAGGGAGGTGTGAAATCACATCGAGGGAGTACTGTGACTTCATGAAGGGATACTTTCATGAGGAGGCAACCCTCTGCTCGCAAGTGCACTGTATGGATGACGTGTGTGGCCTCCTTCCTTTCCTGAACCCGGAGGTCCCAGATCAGTTCTACCGCCTATGGCTCTCGCTGTTCCTGCATGCTGGGATCCTGCATTGCCTGGTGTCGGTATGCTTTCAGATGACAATTCTCCGAGATCTAGAGAAACTGGCTGGATGGCTGCGAATATCCATCATCTATATCCTGAGTGGTATTACAGGAAACCTGGCTAGTGCCATCTTTCTACCCTACAGAGCCGAGGTGGGTCCAGCTGGCTCTCAGTTCGGCATCTTGGCCTGTCTCTTCGTGGAGCTGATCCAGAGCTGGCAGATTCTGGCTCAGCCGTGGCGCGCCTTCACTAAACTGCTGTGTGTCGTGCTTTTTCTGTTCGCCTTCGGCCTGCTGCCCTGGATTGACAACTTTGCCCACATCTCCGGCTTCATCTCGGGCTTCTTTCTCTCCTTCGCCTTCTTACCGTACATCAGTTTCGGCCGTCTGGACATGTACCGCAAGCGCTGCCAGATCATCATCTTCCTGGTGGTGTTCCTCGGCCTGTTCGCAGGACTTGTGGTGCTCTTTTACGTGCACCCTATTAAGTGTGAGTGGTGCGAGCTGCTCACCTGCATTCCCTTCACCGACAAGTTCTGTGAGAAGTATGACCTTAACGCGCACCTCCATTGAGGGAGAGGCGGGGCTTCAGGGACAGAGGGATTCAATTGGCCGATAATCTGCAAATGTCAGACCCCTGCTGTCCAGATGCACTTCATCTCTCCAAAATGAAGCCCTATCTGTGAACATGGACAGTATGCTTGTGTTTTTTTCTACTCGACTTTGACCATGATTTTAGGACTCTGAGAATGAAGAACGCTTTATAATGTACCCTATAGTTTTATGTAGTCTTTCAATAAGGGTGTCTGATAATCATGCGAACACAGGGTCACCCTCTGCCGGAAACTTTCTTTCACACTACAGTCTCAGAAGGCAGTGTCATAATAAAAGCACTGGTACACCAAACGGAGAACACCCGTCTTCTCCTAGTTGATTGTTGTACTTGTATTGTTTTAGCATGTCAGGGGGTAGGTTTGTCTTTGTATAGTCGACCTCAGAATCCagggacgaaaaaaaaaaactctgtaccTTCGGTGCCTTGATAAATGTACCTACTACTGCCATATTTTCGTTACACGTTGAGCACTCAAATGATATTCTTTTATTTGTGTGTTACTTCTAATGGAGTAATGGTTGATTGTGAAAGGGTAGTGTTTTAGCTACCCACTTTACTCACTTGTTACAGAATACAGCTAAAAACAATCTGCA
>TCONS_00052146
CGCGCACCAATCGGCCACGCACTTGACCGACTCTCTGTCGACACGGGCGGGGCTCCGTGTTTGTGAAACTGAATTACCGGCAGACCACAACTAACTTACACTGAGCCGATCGCTTCTGctcggtgtgtgtgtgtcgtgcGCGCGTGGGAATGTACTCGCTTCTGCGTGGGGACAATCTTATGAACTGCTCTGCGATGTCTTAACATTGGATTTTATCAGCGAGAGCCTCAAGACGGAGAGACTTTGACATCTGCAGCTGTTTATTTTCTTGCGCCGCTTTAACGTTggacaaaatgaaataaatatacacaccCTCGATTTCATTTCTTCATAGGGTCCTGGAGACTTCAGCTGTTCGTTTTCCCTCTTCACGAAGTGCTTGAGAATCGAGTAAGGCTGGCAGGTCTAAGGAGACGCAGGCAGCATGGCTGAACTCAGACGCGACAGCACCAGCAGCCTGCAGCGCAAGAAGCCGCCATGGCTAAAACTGGACATTCCCACTGCTCACGTGTCTGTGGATGAGGTTCCTGCTTTTGTTCCGCCAGTGAAGAGGCAAGGTTTCCACCGCAGTGCCAGTATGCCAGTGGAGACTTCTCATTTCCACTCTCCCCAACGGGACATCATCGACCATCGGCGGGCTGCTTTCCAGCGCCAGTCTTCAATCACACAAACCATCAAGAGCAGGAGGGTGCACTTTGAGAGGATTAACACTGTGCCCATTAAGGGTCACCGCGCTGGGAGGCGCGGGTTCAGACGGCATCAGTCTCTCTCCAGAACCCTGCTCAGGTACAGCGGGCCAC

Function

symbol description
rhbdf1a Predicted to enable growth factor binding activity and serine-type endopeptidase activity. Predicted to be involved in several processes, including negative regulation of protein secretion; regulation of epidermal growth factor receptor signaling pathway; and regulation of proteasomal protein catabolic process. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).

GO:

id name namespace
GO:0061136 regulation of proteasomal protein catabolic process biological_process
GO:0016477 cell migration biological_process
GO:0050708 regulation of protein secretion biological_process
GO:0050709 negative regulation of protein secretion biological_process
GO:0015031 protein transport biological_process
GO:0008283 cell population proliferation biological_process
GO:0042058 regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019838 growth factor binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-75 Predicted to enable growth factor binding activity and serine-type endopeptidase activity. Predicted to be involved in several processes, including negative regulation of protein secretion; regulation of epidermal growth factor receptor signaling pathway; and regulation of proteasomal protein catabolic process. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).

Ensembl:

ensembl_id ENSDARG00000036541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052145 False 3541 mRNA 0.51 18 54896331 54992934
TCONS_00052146 True 800 mRNA 0.54 4 54921655 54993027

Neighbor

gene id symbol gene type direction distance location
XLOC_026814 NA coding downstream 12151 54873401 ~ 54884180 (-)
XLOC_026813 ubald1b coding downstream 49887 54833658 ~ 54846444 (-)
XLOC_026812 NA coding downstream 75431 54791553 ~ 54820900 (-)
XLOC_026811 NA coding downstream 112010 54748396 ~ 54784321 (-)
XLOC_026810 s1pr2 coding downstream 227146 54616015 ~ 54669185 (-)
XLOC_026816 nprl3 coding upstream 52319 55045346 ~ 55079742 (-)
XLOC_026817 hbba2 coding upstream 98203 55091230 ~ 55092051 (-)
XLOC_026818 hbba1 coding upstream 105430 55098457 ~ 55099272 (-)
XLOC_026819 hbba1 coding upstream 110418 55103445 ~ 55104310 (-)
XLOC_026820 hbae1.1 coding upstream 127303 55120330 ~ 55121125 (-)
XLOC_026805 NA non-coding downstream 1053547 53842532 ~ 53842784 (-)
XLOC_026804 BX004869.1 non-coding downstream 1206903 53689310 ~ 53689428 (-)
XLOC_026831 NA non-coding upstream 845427 55838454 ~ 55839514 (-)
XLOC_026834 CU855917.1 non-coding upstream 1418114 56411141 ~ 56413023 (-)
XLOC_026840 NA non-coding upstream 2044067 57037094 ~ 57037670 (-)
XLOC_026851 CT583687.2 non-coding upstream 3064587 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 3115404 58108431 ~ 58110154 (-)

Expression


Co-expression Network