XLOC_026820 (hbae1.1)


Basic Information

Item Value
gene id XLOC_026820
gene name hbae1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55120330 ~ 55121125 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052154
CAGAGGTCCCCCTGCTTCCTGTGAGCAGTATAAAACAGCCTGTCCTCCTGGCCTCAGACACAGAAGTTTGCTGTAAAGTCATCCTTCCACAATGAGTCTCTCTGCCAAAGACAAAGCTGCCGTCAAAACCCTGTGGGCCAAGATCGCTGGAAAGGCTGACGACATCGGACACGATGCTCTCTCCAGGATGTTGATTGTCTACCCCCAGACCAAGACCTACTTCTCTCACTGGAAAGACCTGAGCCCAGGCTCTGCCCCAGTGAGGAAACACGGCAAGACTGTGATGGGAGGCGTTGCTGAGGCTGTCAGCAAAATCGATGACCTTAATGCCGGACTCCTGAACCTCAGTGAGCTCCATGCTTTCCAGCTGCGTGTGGACCCCGCCAATTTCAAGATTCTGTCCCACAACATCCTCGTGGTTCTGGCCACTTTGTTCCCCGCCGATTTCACTCCTGAGGCTCATGTTGCAATGGACAAGTTCCTCTCAGCTCTGGCTCTGGCCATGTCTGAGAAGTACAGATAAACACACTTCACTGTGCTCCAAACTCTCTGTTATGTATTGAGACAATAAATTATGATGAAAAACATTAACGAAAGGCCTGTTGTGTATGATTTCATAAcattgtttgtttt

Function

symbol description
hbae1.1 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in several structures, including hematopoietic cell; hematopoietic system; mesoderm; presumptive blood; and renal system. Human ortholog(s) of this gene implicated in Heinz body anemia; alpha thalassemia; familial erythrocytosis 7; and hemoglobin H disease. Orthologous to human HBA1 (hemoglobin subunit alpha 1).

GO:

id name namespace
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0043177 organic acid binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-80 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in several structures, including hematopoietic cell; hematopoietic system; mesoderm; presumptive blood; and renal system. Human ortholog(s) of this gene implicated in Heinz body anemia; alpha thalassemia; familial erythrocytosis 7; and hemoglobin H disease. Orthologous to human HBA1 (hemoglobin subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000089475

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052154 True 633 mRNA 0.50 3 55120330 55121125

Neighbor

gene id symbol gene type direction distance location
XLOC_026819 hbba1 coding downstream 16020 55103445 ~ 55104310 (-)
XLOC_026818 hbba1 coding downstream 21058 55098457 ~ 55099272 (-)
XLOC_026817 hbba2 coding downstream 28279 55091230 ~ 55092051 (-)
XLOC_026816 nprl3 coding downstream 40588 55045346 ~ 55079742 (-)
XLOC_026815 rhbdf1a coding downstream 127303 54896331 ~ 54993027 (-)
XLOC_026821 hbae1.3 coding upstream 6424 55127549 ~ 55128258 (-)
XLOC_026822 hbae1.3 coding upstream 17288 55138413 ~ 55139127 (-)
XLOC_026823 hbae3 coding upstream 25293 55146418 ~ 55147788 (-)
XLOC_026824 kank2 coding upstream 40502 55161627 ~ 55214130 (-)
XLOC_026825 dock6 coding upstream 97472 55218597 ~ 55328548 (-)
XLOC_026814 NA non-coding downstream 236150 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 299430 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 336009 54748396 ~ 54784321 (-)
XLOC_026805 NA non-coding downstream 1277546 53842532 ~ 53842784 (-)
XLOC_026804 BX004869.1 non-coding downstream 1430902 53689310 ~ 53689428 (-)
XLOC_026831 NA non-coding upstream 717329 55838454 ~ 55839514 (-)
XLOC_026834 CU855917.1 non-coding upstream 1290016 56411141 ~ 56413023 (-)
XLOC_026840 NA non-coding upstream 1915969 57037094 ~ 57037670 (-)
XLOC_026851 CT583687.2 non-coding upstream 2936489 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 2987306 58108431 ~ 58110154 (-)

Expression


Co-expression Network