XLOC_026833 (cyth1a)


Basic Information

Item Value
gene id XLOC_026833
gene name cyth1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56408840 ~ 56574965 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052179
TCAGTAGTAATGACCATGGTTGTTGTTGTTACATAAAGAAGTTTAGATAACATACTTCTAAAGGATTTCGTATTTTGATTGCAAAAATGCTTCCAATTCTGGTCTGTTCTTTAATGTTAATAGagaaacattttcttttgtttcattACAGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATCGAGCAGCTCACGTGTGTGGGCGAGAGcaaaacaacacaaaggAACAAACAAATTGCAATGGGAAGAAAAAAGTTCAACATGGACCCCAAGAAAGGGATCcagtttcttctggagaacgaCCTCCTGCAACAGACGCCCGAAGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTGAACAAAACTGTTATCGGGGATTACCTAGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTGGAGCTCCACGAATTTGCCGACCTCAACCTCGTTCAGGCTCTGAGGCAGTTTCTCTGGAGTTTCAGGCTTCCTGGTGAAGCGCAGAAGATTGACAGGATGATGGAGGCGTTTGCGTCGCGGTACTGCCAATGCAACCCTGGAGTCTTTCAGTCCACAGACACATGTTATGTCCTGTCCTTTGCCATCATCATGCTGAACACCAGCCTTCACAATCCTAACGTCAGGGACAAACCGGCCGTGGAGCGCTTCATCTCCATGAACAGAGGCATTAATGACGGAGGAGACCTGCCGGAGGAGCTGCTTAGGAACCTGTATGAGAGCATCAAAAGCGAACCTTTCAAAATCCCTGAGGATGACGGCAATGACCTGACGCATACGTTCTTCAACCCGGACAGAGAGGGCTGGCTGCTGAAGCTAGGTGGACGGGTAAAAACTTGGAAGAGGCGATGGTTTATTCTCACCGACAACTGCTTGTACTATTTTGAGTACACAACGGACAAGGAGCCACGTGGCATTATTCCCCTGGAGAACCTCAGCATCCGAGAGGTGGAGGAACCGCGCAAACCTAACTGCTTTGAGCTCTACAACCCCAACCATAAAGGCCAGGTGATCAAGGCCTGCAAGACGGAGGCGGACGGGAGGGTGGTGGAGGGAAACCACGTGGTCTACAGGATATCAGCACCCACACCTGAGGAGAAGGAGGAGTGGATCAAGTCCATCAAAGCGAGCATCAGCCGGGACCCCTTCTACGACATGCTGGCCACCAGGAAGAGACGCATCGCCAACAAGAAGTGAAGTCGGCGCCTGAGGACCACCTCTTCCCCGAAGCCTGTTCCCAGCGACACACACACTGCCTTCTGGGACGGCCCGCGTGTGTCTGACGGGTCGCAGCTGAAGAATTTAATGTTTATAGTTCCTCTCTCAGTGTTTCTCTTGGTATGAAAACACAGCTGTCCTGATCTGTTTGTGTTTGCAtggatgtcagtgtgtgtgtgtgtgtgtacccgcGCGGGAGACATTTCTGCGATGTCAGATAGAAAAAGCCATTTCGCTTCAGAGACGAGACCTGCGATCGTGGACATCCAGGCCTCATTAACCCTTCGTGGCCATTCTCTCCTAAAGGTGCTAGAAACTCACATAGATGCTAATGAGCCAATGCTAACGCTAAGTGGCGGTCTGGAGTCAGCTGGACTGATTTCATGTTGTTAGAAGTGAGAAACAGCAAATATACAACTCATAGATTTAGTTTCTGTTGTAGATCAGAAGGTACCGGTCCATTACTCTTTCCGTTTTGATCTCAGGGTTATTTCCATGACAGCGTTCTCAACTGAAAACCGTAAGTTTTGAAGTCCGCATGATTTAAAAGCTGCGATCGTTTATTTATTCAGCggcgtacgacagaatttcgcacgcacAAACTTGAGTGTGACCGCAACATAAGTGTTttgaagcagggttgaaactaggCCCTCCAGGAACTTAGTTTGACACTCCTGTCTAAGGGCAATAGGGATCAGGCCCGGCCCTAAGCAATTTGGCACCCTTgacaagatttcaggtggcgccccgtca
>TCONS_00052181
ATGCCTCATAAAGAACAAGCTGATGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATCGAGCAGCTCACGTGTGTGGGCGAGAGcaaaacaacacaaaggAACAAACAAATTGCAATGGGAAGAAAAAAGTTCAACATGGACCCCAAGAAAGGGATCcagtttcttctggagaacgaCCTCCTGCAACAGACGCCCGAAGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTGAACAAAACTGTTATCGGGGATTACCTAGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTGGAGCTCCACGAATTTGCCGACCTCAACCTCGTTCAGGCTCTGAGGCAGTTTCTCTGGAGTTTCAGGCTTCCTGGTGAAGCGCAGAAGATTGACAGGATGATGGAGGCGTTTGCGTCGCGGTACTGCCAATGCAACCCTGGAGTCTTTCAGTCCACAGACACATGTTATGTCCTGTCCTTTGCCATCATCATGCTGAACACCAGCCTTCACAATCCTAACGTCAGGGACAAACCGGCCGTGGAGCGCTTCATCTCCATGAACAGAGGCATTAATGACGGAGGAGACCTGCCGGAGGAGCTGCTTAGGAACCTGTATGAGAGCATCAAAAGCGAACCTTTCAAAATCCCTGAGGATGACGGCAATGACCTGACGCATACGTTCTTCAACCCGGACAGAGAGGGCTGGCTGCTGAAGCTAGGTGGACGGGTAAAAACTTGGAAGAGGCGATGGTTTATTCTCACCGACAACTGCTTGTACTATTTTGAGTACACAACGGACAAGGAGCCACGTGGCATTATTCCCCTGGAGAACCTCAGCATCCGAGAGGTGGAGGAACCGCGCAAACCTAACTGCTTTGAGCTCTACAACCCCAACCATAAAGGCCAGGTGATCAAGGCCTGCAAGACGGAGGCGGACGGGAGGGTGGTGGAGGGAAACCACGTGGTCTACAGGATATCAGCACCCACACCTGAGGAGAAGGAGGAGTGGATCAAGTCCATCAAAGCGAGCATCAGCCGGGACCCCTTCTACGACATGCTGGCCACCAGGAAGAGACGCATCGCCAACAAGAAGTGA
>TCONS_00052180
ATGCCTCATAAAGAACAAGCTGATGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATCGAGCAGCTCACGTGTGTGGGCGAGAGcaaaacaacacaaaggAACAAACAAATTGCAATGGGAAGAAAAAAGTTCAACATGGACCCCAAGAAAGGGATCcagtttcttctggagaacgaCCTCCTGCAACAGACGCCCGAAGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTGAACAAAACTGTTATCGGGGATTACCTAGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTGGAGCTCCACGAATTTGCCGACCTCAACCTCGTTCAGGCTCTGAGGCAGTTTCTCTGGAGTTTCAGGCTTCCTGGTGAAGCGCAGAAGATTGACAGGATGATGGAGGCGTTTGCGTCGCGGTACTGCCAATGCAACCCTGGAGTCTTTCAGTCCACAGACACATGTTATGTCCTGTCCTTTGCCATCATCATGCTGAACACCAGCCTTCACAATCCTAACGTCAGGGACAAACCGGCCGTGGAGCGCTTCATCTCCATGAACAGAGGCATTAATGACGGAGGAGACCTGCCGGAGGAGCTGCTTAGGAACCTGTATGAGAGCATCAAAAGCGAACCTTTCAAAATCCCTGAGGATGACGGCAATGACCTGACGCATACGTTCTTCAACCCGGACAGAGAGGGCTGGCTGCTGAAGCTAGGTGGACGGGTAAAAACTTGGAAGAGGCGATGGTTTATTCTCACCGACAACTGCTTGTACTATTTTGAGTACACAACGGACAAGGAGCCACGTGGCATTATTCCCCTGGAGAACCTCAGCATCCGAGAGGTGGAGGAACCGCGCAAACCTAACTGCTTTGAGCTCTACAACCCCAACCATAAAGGCCAGGTGATCAAGGCCTGCAAGACGGAGGCGGACGGGAGGGTGGTGGAGGGAAACCACGTGGTCTACAGGATATCAGCACCCACACCTGAGGAGAAGGAGGAGTGGATCAAGTCCATCAAAGCGAGCATCAGCCGGGACCCCTTCTACGACATGCTGGCCACCAGGAAGAGACGCATCGCCAACAAGAAGTGA
>TCONS_00052183
GGGGCGAGTGTGATGACGTGTGACGGTCGCTGCGAAACACAGATGCCCGTGTGTCTGGAGCGCTTATTCCGCTGGATGTTATTGATCCACGCCAGTGAATAAGCCGAGGAGAGCTGAACATCCTTCCTCCGTCCACAAAAACAAACGGATTTAACCGAGGACTGAGCCAGAATCTCCGTTTATTCCGCGTTAAACAGGACCTGTTTGTATATACAGCATATAAAGAGCCCTCATTATAAAGAACACATCGGTGTCGGGAGCGCGCTCTCATCACATCACTTCAATATTTTATTTGCGCTTATCTGCAGACATGGATGAAGATAACCAAGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATCGAGCAGCTCACGTGTGTGGGCGAGAGcaaaacaacacaaaggAACAAACAAATTGCAATGGGAAGAAAAAAGTTCAACATGGACCCCAAGAAAGGGATCcagtttcttctggagaacgaCCTCCTGCAACAGACGCCCGAAGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTGAACAAAACTGTTATCGGGGATTACCTAGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTGGAGCTCCACGAATTTGCCGACCTCAACCTCGTTCAGGCTCTGAGGCAGTTTCTCTGGAGTTTCAGGCTTCCTGGTGAAGCGCAGAAGATTGACAGGATGATGGAGGCGTTTGCGTCGCGGTACTGCCAATGCAACCCTGGAGTCTTTCAGTCCACAGACACATGTTATGTCCTGTCCTTTGCCATCATCATGCTGAACACCAGCCTTCACAATCCTAACGTCAGGGACAAACCGGCCGTGGAGCGCTTCATCTCCATGAACAGAGGCATTAATGACGGAGGAGACCTGCCGGAGGAGCTGCTTAGGAACCTGTATGAGAGCATCAAAAGCGAACCTTTCAAAATCCCTGAGGATGACGGCAATGACCTGACGCATACGTTCTTCAACCCGGACAGAGAGGGCTGGCTGCTGAAGCTAGGTGGACGGGTAAAAACTTGGAAGAGGCGATGGTTTATTCTCACCGACAACTGCTTGTACTATTTTGAGTACACAACGGACAAGGAGCCACGTGGCATTATTCCCCTGGAGAACCTCAGCATCCGAGAGGTGGAGGAACCGCGCAAACCTAACTGCTTTGAGCTCTACAACCCCAACCATAAAGGCCAGGTGATCAAGGCCTGCAAGACGGAGGCGGACGGGAGGGTGGTGGAGGGAAACCACGTGGTCTACAGGATATCAGCACCCACACCTGAGGAGAAGGAGGAGTGGATCAAGTCCATCAAAGCGAGCATCAGCCGGGACCCCTTCTACGACATGCTGGCCACCAGGAAGAGACGCATCGCCAACAAGAAGTGA
>TCONS_00052182
GGGGCGAGTGTGATGACGTGTGACGGTCGCTGCGAAACACAGATGCCCGTGTGTCTGGAGCGCTTATTCCGCTGGATGTTATTGATCCACGCCAGTGAATAAGCCGAGGAGAGCTGAACATCCTTCCTCCGTCCACAAAAACAAACGGATTTAACCGAGGACTGAGCCAGAATCTCCGTTTATTCCGCGTTAAACAGGACCTGTTTGTATATACAGCATATAAAGAGCCCTCATTATAAAGAACACATCGGTGTCGGGAGCGCGCTCTCATCACATCACTTCAATATTTTATTTGCGCTTATCTGCAGACATGGATGAAGATAACCAAGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATCGAGCAGCTCACGTGTGTGGGCGAGAGcaaaacaacacaaaggAACAAACAAATTGCAATGGGAAGAAAAAAGTTCAACATGGACCCCAAGAAAGGGATCcagtttcttctggagaacgaCCTCCTGCAACAGACGCCCGAAGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTGAACAAAACTGTTATCGGGGATTACCTAGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTGGAGCTCCACGAATTTGCCGACCTCAACCTCGTTCAGGCTCTGAGGCAGTTTCTCTGGAGTTTCAGGCTTCCTGGTGAAGCGCAGAAGATTGACAGGATGATGGAGGCGTTTGCGTCGCGGTACTGCCAATGCAACCCTGGAGTCTTTCAGTCCACAGACACATGTTATGTCCTGTCCTTTGCCATCATCATGCTGAACACCAGCCTTCACAATCCTAACGTCAGGGACAAACCGGCCGTGGAGCGCTTCATCTCCATGAACAGAGGCATTAATGACGGAGGAGACCTGCCGGAGGAGCTGCTTAGGAACCTGTATGAGAGCATCAAAAGCGAACCTTTCAAAATCCCTGAGGATGACGGCAATGACCTGACGCATACGTTCTTCAACCCGGACAGAGAGGGCTGGCTGCTGAAGCTAGGTGGACGGGTAAAAACTTGGAAGAGGCGATGGTTTATTCTCACCGACAACTGCTTGTACTATTTTGAGTACACAACGGACAAGGAGCCACGTGGCATTATTCCCCTGGAGAACCTCAGCATCCGAGAGGTGGAGGAACCGCGCAAACCTAACTGCTTTGAGCTCTACAACCCCAACCATAAAGGCCAGGTGATCAAGGCCTGCAAGACGGAGGCGGACGGGAGGGTGGTGGAGGGAAACCACGTGGTCTACAGGATATCAGCACCCACACCTGAGGAGAAGGAGGAGTGGATCAAGTCCATCAAAGCGAGCATCAGCCGGGACCCCTTCTACGACATGCTGGCCACCAGGAAGAGACGCATCGCCAACAAGAAGTGA
>TCONS_00052185
GCTGCGAAACACAGATGCCCGTGTGTCTGGAGCGCTTATTCCGCTGGATGTTATTGATCCACGCCAGTGAATAAGCCGAGGAGAGCTGAACATCCTTCCTCCGTCCACAAAAACAAACGGATTTAACCGAGGACTGAGCCAGAATCTCCGTTTATTCCGCGTTAAACAGGACCTGTTTGTATATACAGCATATAAAGAGCCCTCATTATAAAGAACACATCGGTGTCGGGAGCGCGCTCTCATCACATCACTTCAATATTTTATTTGCGCTTATCTGCAGACATGGATGAAGATAACCAAGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATTGAGCAGCTCACGTGTGTGGGCGAGAGcaaaacaacacaaaggAACAAACAAATTGCAATGGGAAGAAAAAAGTTCAACATGGACCCCAAGAAAGGGATCcagtttcttctggagaacgaCCTCCTGCAACAGACGCCCGAAGACATCGCACAGTTCCTCTATAAAGGCGAAGGCTTGAACAAAACTGTTATCGGGGATTACCTTGGGGAACGGGATGAATTCAACATCAAAGTGCTCCAGGCTTTTGTGGAGCTCCACGAATTTGCCGACCTTAACCTCGTTCAGGCTCTGAGG
>TCONS_00052186
ACGCACACATCCGTGACAACAAAGAAAGCTGTTTAAAGTAAGCTCACAGACACCGACAGAGTAACAAAGTGACAAAAGGTATGTTTAGATTGAGAAAATGTCACCGCAGGGACAGTAAAGTCACTCACCCGTCACCGACGACCACACACTTGATGGCCTGCATGACTTTTACTCGATTTTTGCTCTCCCTCCGCGCGGAACTGATGAAAAAACCCCTCTAACGAGCGACGCCGCTTCAAACAACACCAGTCACAGCTGCACGTACCTGAAGACCTGTCCTTAGAAGAGAGAGATGAGCTGTCCAACATAAGGCGCAGAAAAAAAGAGCTGCTCGATGACATTGAGCGGCTGAAGTTCGAGATCGCTGAAGTGATGACAGAAATTGAGCAGCTCACGTGTGTGGGCGAGAG

Function

symbol description
cyth1a Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH1 (cytohesin 1).

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-657 Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH1 (cytohesin 1).

Ensembl:

ensembl_id ENSDARG00000005159 ENSDARG00000089829

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052179 False 2094 mRNA 0.49 12 56408840 56456527
TCONS_00052181 False 1191 mRNA 0.51 13 56409617 56512473
TCONS_00052180 False 1191 mRNA 0.51 13 56409617 56512473
TCONS_00052183 False 1495 mRNA 0.51 13 56409617 56541751
TCONS_00052182 False 1495 mRNA 0.51 13 56409617 56541751
TCONS_00052185 False 717 mRNA 0.47 6 56475776 56541723
TCONS_00052186 True 410 processed_transcript 0.49 3 56480812 56574965

Neighbor

gene id symbol gene type direction distance location
XLOC_026832 FQ311920.1 coding downstream 52874 56354644 ~ 56355966 (-)
XLOC_026830 cep112 coding downstream 378723 55684449 ~ 56030117 (-)
XLOC_026831 NA coding downstream 569326 55838454 ~ 55839514 (-)
XLOC_026829 axin2 coding downstream 758069 55627948 ~ 55650771 (-)
XLOC_026828 tex2 coding downstream 871744 55487261 ~ 55537096 (-)
XLOC_026836 stk19 coding upstream 26864 56601829 ~ 56617097 (-)
XLOC_026837 zgc:112148 coding upstream 286094 56861059 ~ 56871984 (-)
XLOC_026838 ush1ga coding upstream 307867 56882832 ~ 56896702 (-)
XLOC_026839 hid1a coding upstream 347025 56921990 ~ 56933578 (-)
XLOC_026840 NA coding upstream 462129 57037094 ~ 57037670 (-)
XLOC_026814 NA non-coding downstream 1524660 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 1587940 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 1624519 54748396 ~ 54784321 (-)
XLOC_026805 NA non-coding downstream 2566056 53842532 ~ 53842784 (-)
XLOC_026851 CT583687.2 non-coding upstream 1482649 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 1533466 58108431 ~ 58110154 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 1635340 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 1717344 58292309 ~ 58296549 (-)

Expression


Co-expression Network