XLOC_026840


Basic Information

Item Value
gene id XLOC_026840
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57037094 ~ 57037670 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053147
GTTCACGAACATGCTTTAAAAAAGGCTCCCTTTAGAAAAGGATTTGATTGGTTGGCCCGTTGCCATCGCATTGTCACTCACGGAGTGTAAACaagactctgattggctgctcgCCAGTCCGCATTGGgctatctgaaaaaaagaaataactgGATCTACGGTTTCAAGGCGTCCCAGGGTTAGATGATGAAAGCAGATAAGAAGGGACAGTTTCAAGGCGCTCCAAAGGCGGACCCTCTTCTTTCGGCCCTGGAGCGATAAACTCGAAGAGCACACCAGGAAGAGAATTATTACTAAAAGCTCGATTCTTGAAGGATTAAAAAGGCTTCTTTCTTCGGAGAATTATGATATACACACGCGGGACGGATTTCTGGACACATTGGTAAGAATTAAGCGATGGAGACGAAAAAGTTTGGATGAGCTTTACGCGAACTCGTCGAGAAAATGTTTCTCTGAATGCGCCTGAGGGGAACCAGAGACAAACGAAGAATAATGACTGAACTGCAATGACAACGACGCACAATGTCGTGTGTAATGTCGACATGTCGTGTGATAtacataaatgttatttaaatgt

Function

GO:

id name namespace
GO:0007276 gamete generation biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0019953 sexual reproduction biological_process
GO:0032504 multicellular organism reproduction biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005813 centrosome cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0030289 protein phosphatase 4 complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053147 True 577 lncRNA 0.44 1 57037094 57037670

Neighbor

gene id symbol gene type direction distance location
XLOC_026839 hid1a coding downstream 103516 56921990 ~ 56933578 (-)
XLOC_026838 ush1ga coding downstream 140392 56882832 ~ 56896702 (-)
XLOC_026837 zgc:112148 coding downstream 165110 56861059 ~ 56871984 (-)
XLOC_026836 stk19 coding downstream 419997 56601829 ~ 56617097 (-)
XLOC_026835 SMIM10 coding downstream 467126 56565300 ~ 56569968 (-)
XLOC_026841 socs3a coding upstream 385467 57423137 ~ 57425961 (-)
XLOC_026842 cyth1a coding upstream 424558 57462228 ~ 57530323 (-)
XLOC_026843 usp36 coding upstream 545986 57583656 ~ 57630791 (-)
XLOC_026844 timp2b coding upstream 595295 57632965 ~ 57666996 (-)
XLOC_026845 lgals3bpa coding upstream 661576 57699246 ~ 57711711 (-)
XLOC_026834 CU855917.1 non-coding downstream 624071 56411141 ~ 56413023 (-)
XLOC_026831 NA non-coding downstream 1197580 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 2152914 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 2216194 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 2252773 54748396 ~ 54784321 (-)
XLOC_026851 CT583687.2 non-coding upstream 1019944 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 1070761 58108431 ~ 58110154 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 1172635 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 1254639 58292309 ~ 58296549 (-)
XLOC_026861 NA non-coding upstream 1262550 58300220 ~ 58303257 (-)
XLOC_026833 cyth1a coding downstream 462129 56408840 ~ 56574965 (-)

Expression


Co-expression Network