XLOC_026851 (CT583687.2)


Basic Information

Item Value
gene id XLOC_026851
gene name CT583687.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58057614 ~ 58059819 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052211
TGTAAGAATCCAAaatatcagaccctgagaactgttatggaattttCATGAGACAAGATGCAGTGCTCCAATGCACTTTCTAATCTGAGAAATGATGAAGAAAGCAGCTGTTCAGCTGTTCaattcaaatcactgttgacaatgcaaacttagGCTAGAGAAACAGAGCTACACTACAGCAGGGGGTAATGCGAGAAAGTCATCCTTCTCCTTCCACCTCAAGccccccttcttgacccttatgttaccttctgattagagcacatttcacataaaatgttcaaggttttaatatggtttatcttgcagcactatattcatgtttggtaacattttaaatgtctctgtgtgattggtaaagtggtcttattttacagtaatatttcactGGTATATGTTGATTGGGTTTTTGACATAGATAAGATCTTCACAAGATGCTCTCCCTCCTCAGAGATGGTTAAGTCCTCAAATTCACCAGGCAAGGGTTTCTGTGacacttctattgtcttgaatttatgggtgtttgttttgacttgagtatataaggtaaaGATGTGATATGGGTCAGGGggatcttgtaaaaagacaccccattgcagtatctctgagacttatgctgcaatgtatttctctgGTCAGGTTTGCATCTATAattcttggatttatctttgattaatggatgttgtattgctacagtctcatctctgaattg

Function

GO:

id name namespace
GO:0030149 sphingolipid catabolic process biological_process
GO:1901615 organic hydroxy compound metabolic process biological_process
GO:0097164 ammonium ion metabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0046466 membrane lipid catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097851

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052211 True 712 lncRNA 0.38 2 58057614 58059819

Neighbor

gene id symbol gene type direction distance location
XLOC_026850 si:ch211-256e16.10 coding downstream 11295 58039261 ~ 58046319 (-)
XLOC_026849 syngr2a coding downstream 277813 57766627 ~ 57779801 (-)
XLOC_026848 cant1a coding downstream 292445 57747716 ~ 57765169 (-)
XLOC_026847 lgals3bpb coding downstream 313291 57741933 ~ 57744323 (-)
XLOC_026846 zgc:112492 coding downstream 319701 57718367 ~ 57737913 (-)
XLOC_026852 si:ch211-256e16.8 coding upstream 7931 58067750 ~ 58078522 (-)
XLOC_026853 si:ch211-256e16.6 coding upstream 45080 58104899 ~ 58116314 (-)
XLOC_026854 NA coding upstream 48612 58108431 ~ 58110154 (-)
XLOC_026855 snu13a coding upstream 98776 58158595 ~ 58165254 (-)
XLOC_026856 si:ch211-256e16.11 coding upstream 129084 58188903 ~ 58189429 (-)
XLOC_026840 NA non-coding downstream 1019944 57037094 ~ 57037670 (-)
XLOC_026834 CU855917.1 non-coding downstream 1644591 56411141 ~ 56413023 (-)
XLOC_026831 NA non-coding downstream 2218100 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 3173434 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 3236714 54791553 ~ 54820900 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 150486 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 232490 58292309 ~ 58296549 (-)
XLOC_026861 NA non-coding upstream 240401 58300220 ~ 58303257 (-)
XLOC_026863 NA non-coding upstream 412527 58472346 ~ 58476730 (-)

Expression


Co-expression Network