G766599 (LOC106578100)


Basic Information

Item Value
gene id G766599
gene name LOC106578100
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6201369 ~ 6209209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU872873
CCCTCACACTCATTATCATCATTATCACAATGTTCactaatttcacagtattattccaaactcatagtgtggaaatataaaacacaggaacaaAAACACGTTTTTGACTACGGCGCCCctttaaccattagtggggaaaatgcaaaactgacccaagatcagcatctagggatCACTTGACTGAACtcctctccaatCAAACACACGTATCTCACCCTGGTCAGTGGCTCTGCGGGGTTTCTGGTTGGACGATACGCTGCGCTGTACCTTGCTGGGCGGGGACGGGGCGCTACTTTTCGAGAGTTCATTTCCTGGGCGGGGCTTAATGATGCCCTCATCCAGCTGGAGAACAGGAAAGAAGAGaattcatcagagagagagagacagagagacacacagagcgagacagagagacacagagagagagacacagagagagagagacacagagcgagacagagagacacagagagagagacacagaaagagacagagacagagacagacacagagagagaaagagagagacagagagagaaagagagacagagagagagacacagagagagaaagagagagacagagagagagagagagagacacagagagagacagagacacggagagagagagagagagacagagagagagacaccaagaAACACAgagtatatgtgagtgtgtgtatctgtgtacttCGTGGTTTGTGTAGTCCactagtagtgtgtgtgtgtgtgtacacctcgTGGTTTGTGTAgtccagtagtagtgtgtgtatatgtgtgtgtgtgtgtacacacctcGTGGTTTGCGTAGTCcagtagtagtagtgtgtgtgtgtacacctcgTGGTTTGTGTAgtccagtagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtacacctTGTGGTTTGTGTagtccagtagtagtagtagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacctcaTGGTTTGTGTAGTCCAGTAGTAGATACGTGGCCATGACTTCGTTGTATTTCTGGTTGACCAGCGAGTCCTGCACCTCCTCCATGGAGTAACCCATCTGAATCATGAtctct
>TU872875
CAGGGAGAGACAGTAGGGTACCGGCAGGGAGAGACAGTAGGGTACCGGCAGGGAAAGACAGTAGAGTACCGGCAGGGAGAGACAGTAGGGTACCGGCAGGGAGAGACAGTAGGGTACCGGCAGGGAGAGACAGTGTTTATTCTTAAAGATACAGGTAGAAgtgaagggaggaagagaagggcgtgtgtgtgtgtctgtgtgagtgtgtctgtgtgtgtctgtgtgtgtgtccatctctgCGTGTGTCAACCAGCCTGTCGTGTAGCCAGTAATCCTAGTCTACTAATCTTCGTCCAGTGATGGATGATTTTCACGCCCAGGAAGGCTGACCATCCCTTGGGAACAGCTGCATGCCGGCCTGGGCCAACTGGCAAGGAATGGCAGCCAGAGCcaagctctctctgtgtctgtgtctgtgtgtgtgtgtgtctgtgtctgtgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagtcagtatgaatgtgtgtgtgtgtgtgtagagtcagtatgaatgtgtgtgtgtgtgtagagtcagtatgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgtccttGCCGTTCTGTACCCCCTGGTCCAGCGAAGCTCTCTCAGTGAGAGGAGAGTTTCTGCTGCGACCCGACAATATGCtattGGTAGAGGGTGTGGCACTCTTCTTGCGGTCAGAGACCAGCGGGCTAGTCAAAACTTTGGCCGAGCTGCCAGATCCTTTCCTCCCAGAATCCTCCTTGTTGTCTCCCTGACCACGCCCCCTGGCAGAagaccCCTGGTCAGTGGCTCTGCGGGGTTTCTGGTTGGACGATACGCTGCGCTGTACCTTGCTGGGCGGGGACGGGGCGCTACTTTTCGAGAGTTCATTTCCTGGGCGGGGCTTAATGATGCCCTCATCCAGCTGGAGAACAGGAAAGAAGAGaattcatcagagagagagagacagagagacacacagagcgagacagagagacacagagagagagacacagagagagagagacacagagcgagacagagagacacagagagagagacacagaaagagacagagacagagacagacacagagagagaaagagagagacagagagagaaagagagacagagagagagacacagagagagaaagagagagacagagagagagagagagagacacagagagagacagagacacggagagagagagagagagacagagagagagacaccaagaAACACAgagtatatgtgagtgtgtgtatctgtgtacttCGTGGTTTGTGTAGTCCactagtagtgtgtgtgtgtgtgtacacctcgTGGTTTGTGTAgtccagtagtagtgtgtgtatatgtgtgtgtgtgtgtacacacctcGTGGTTTGCGTAGTCcagtagtagtagtgtgtgtgtgtacacctcgTGGTTTGTGTAgtccagtagtagtgtgtgtgttagtgtgtgtgtgtgtgtacacctcgTGGTTTGTGTAgtccagtagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtacacctTGTGGTTTGTGTagtccagtagtagtagtagtagtagtagtgtgtgtgtgtgtgtgtgtgtgtgtacacctcaTGGTTTGTGTAGTCCAGTAGTAGATACGTGGCCATGACTTCGTTGTATTTCTGGTTGACCAGCGAGTCCTGCACCTCCTCCATGGAGTAACCCATCTGAATCATGAtctct
>TU872874
GGTGTGGTGAAGGGTGGTGTGGAGTGGTGTAGAGTGGAGTGGTGTGTGTGGAGTGGTGTGTGTGGAGTGGTGAAGAGTGGTGTGGTGAAGAGTGGTGTAGAGTGGAGTGGTGTAGAGTGGAGTGGTGTAGAGTGGAGTGGTATAGAGTGGAGTGGTGTAGAGTGGAGTGGTGTGTGTGGAGTGGTGTGTGTGGAGTGGTGTAGAGTGGAGTGGTGTAGAGTGGAGTGGTGTAGAgtggagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtGGAGAGTAGAGTGGTGGAGAGTAGAGTGGTGGAGAGTAGAGTGGTGTGTGTGGAGTGGTGTGTGTGGAGTGGTGTGTGTGGAGTGGTGTGTGTGGAGTGGTGTGTGTGGAGTGATGTGGTGTAGAGTGGTGTGgtatagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtagagtggtgtagagtggtgtGGTGTAGAGTGGTGTGTGTGCTCACGGTAGAGGGTGTGGCACTCTTCTTGCGGTCAGAGACCAGCGGGCTAGTCAAAACTTTGGCCGAGCTGCCAGATCCTTTCCTCCCAGAATCCTCCTTGTTGTCTCCCTGACCACGCCCCCTGGCAGAagaccctgagagagagacagagagagagacagagagagacagagagagacagagagagagacagagagagagagaaagagagaaagagacagagagagagacagagagagagaaagagagagagagagagagacagagagagagagagacagagag

Function

NR:

description
PREDICTED: serine/threonine-protein kinase MARK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU872873 False 1099 TUCP 0.47 4 6201369 6202730
TU872875 False 1741 TUCP 0.51 6 6201369 6209209
TU872874 True 913 lncRNA 0.52 2 6205145 6206406

Neighbor

gene id symbol gene type direction distance location
exoc6b LOC106560516 coding downstream 14731 6066184 ~ 6190414 (-)
LOC110531356 LOC106578148 coding downstream 180396 5982772 ~ 6024749 (-)
LOC118966152 NA coding downstream 391270 5813423 ~ 5813875 (-)
LOC110511386 LOC106560508 coding downstream 957523 5194243 ~ 5247622 (-)
LOC110532892 LOC106578154 coding downstream 1129306 5058029 ~ 5075839 (-)
rcor2 rcor2 coding upstream 58925 6265331 ~ 6287151 (-)
LOC118936332 LOC106578081 coding upstream 134170 6340576 ~ 6351208 (-)
LOC118966221 NA coding upstream 134394 6340800 ~ 6340873 (-)
LOC118966228 NA coding upstream 135802 6342208 ~ 6342277 (-)
LOC118966211 NA coding upstream 136904 6343310 ~ 6343381 (-)
G766617 mark2 non-coding downstream 6127 6195100 ~ 6199018 (-)
G766576 NA non-coding downstream 8741 6082979 ~ 6196404 (-)
G766615 NA non-coding downstream 12853 6191050 ~ 6192292 (-)
G766612 NA non-coding downstream 26634 6178254 ~ 6178511 (-)
G766620 NA non-coding upstream 5857 6212263 ~ 6213350 (-)
G766624 NA non-coding upstream 15644 6222050 ~ 6222697 (-)
G766629 NA non-coding upstream 25036 6231442 ~ 6232339 (-)
G766631 NA non-coding upstream 26871 6233277 ~ 6234583 (-)
G766633 NA non-coding upstream 29535 6235941 ~ 6236484 (-)
G765579 LOC101077030 other downstream 906708 5297476 ~ 5298437 (-)
G765347 NA other downstream 1147823 5055480 ~ 5057322 (-)
LOC110515555 NA other downstream 1629273 4574163 ~ 4575872 (-)
G765100 LOC106597704 other downstream 1669066 4446327 ~ 4536079 (-)
G765059 NA other downstream 1885319 4270732 ~ 4319826 (-)
G766640 NA other upstream 45191 6251597 ~ 6262155 (-)
G766665 NA other upstream 134215 6340621 ~ 6365895 (-)
G766749 NA other upstream 250797 6457203 ~ 6464631 (-)
G766850 LOC106578109 other upstream 405673 6612079 ~ 6613412 (-)
LOC110531366 LOC106578102 other upstream 666430 6851197 ~ 6882912 (-)

Expression


Co-expression Network