XLOC_002686 (nt5c2l1)


Basic Information

Item Value
gene id XLOC_002686
gene name nt5c2l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17460358 ~ 17484764 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004992
GCGCGCGGCAGCTAGTTCGCGTGCTCACCACATACGCCCAAACTACGTACACAGGGCTCCTGTTTACCAGCCAAACCCCAGGAAAATTCACTCTGGTGATGTCAACAACATGGCACAATTTAAAGCGCAAAGTGGAGTTTCGTGACCACTTTAGATTGTGTTGATATTTGGGCAGCGGGAGCGAGCGGACGCACCGGGCACACGCGATGGAGCCGCGCATCAACAAAAAAGAGCTCCAGCACAGGGTGTTTGTGAACCGGAGTCTGACGCTTGAAAACATCAAGTGCTATGGCTTCGACATGGATTACACTCTGGCAGTTTATAAATCTCCAGAGTATGAGAGTCTGGGCTTTGAGCTGCTCAGGGACAGGCTTGTGTCCATTGGATATCCGCACGAGCTTCTGGGATATACATACGACTCTACTTTCCCCACACGAGGTCTGGTCTATGACACCACATACGGTAACCTGTTGAAAATAGACTCCAATGGAAACATTCTGGTCTGCACTCACGGCTTCGAGTACCTGAGAGGtgaaCAGGTGGATGAGTATTATCCAAACAAGTTCATCCAGAGAGACGACACTGACCGATTTTACGTCCTCAATACACTCTTCAACCTCTCAGAGACCTATCTTTACGCCTGCCTGGTTGACTTCTACACCAAAAGCACCAGATACAAGAATTGGCCGAAGGGGTTCAAACATGGTGACTTGTTCATGTCACACAGAAGCATGTTTCAGGACGGGACACTGAAGGAACGGACTCTGAAAAACCTGGACAAGTACGTCATTAAAGATCCTCGTATTCCTGTGTTACTGAGCCGCATCAAAGAGGTCGCTAAAGTGTTCCTGGCCACCAACAGCGACTTCAATTACACCGAGGCTATCATGAAATACTTACTGGATGCGGCGACAAGCTCTAAGGGCATGAAAAAGTCATGGCGCTCTTACTTTGACCTGGTGGTTGTGGATACGAGGAAGCCCTTGTTCTTCGCTGGAGGGACAGTTTTACGCCAAGTGGACACAGACACTGGGAAGTTGCGTATCGGCACGTACACCGGAGACCTCCAGCATGGGACGGTGTATTCTGGAGGATCTTCTGATCTAGTCTGTGACTTGCTGGATGTGAAGGGCAAAGACATCCTCTATGTGGGCGATCACATTTTTGGGGACATCCTGAAGTCCAAGAAGCGACAGGGCTGGAAGACGTTCCTTGTGGTTCCTGAGCTTGTGAAGGAACTGCATGTGTGGGCAGACAAATCCAGTATGTTTGAGGAGCTGAAACACCTCGACATCTTCCTTGCAGAGTTGTATCAGCATTTGGACAGTGGAAGTCAAGAGTGTCCAGATATCAGTGCGATCCAGACCAGGATAAAGATGGTGACGTACGGCATGGATCTGTGTTATGGGAAGATGGGCAGTTTGTTGCGCTGTGGCTCTACTAAAACACTGTTCGCCAGTCAGTTACTGCGGTATGCAGACATTTACTCAACCACCTGCCTTAACCTGCTTAACTACCCCTTCAGCTTCCTCTTCAGAGCCCCGCTCGTCCTGTTGCCACATGAGGCCGCTGTGGAGACTCAGAATAAAGAGCAGATGGCAGAGCTGTCAGAGCACATGCGCAGAACCAGCCTCAAGCAGCGTCAGTGTGAGTGTGAGGATGGAGATTGTGGACAAGATGACAACTGTGCCGCCAGAAACAGCGCTTCCACTTCAACTTCAGACAAATAGACATTTTCAGTTTGTTTACTGCTGTAAATAggcctatgatttttttttaacttgcataTGTTTTACCTTCACACGTTTCCATTGCTGTGTGTTGCTGTTCCATAGTTCCGCTCGGATATGTTTCCACTTCCGGCAGAAAGTAAACGGAATTAATTTGCCAAGTTTGCGATGTCTTATTGAGTTAACAGCTGTTATTTGTAAAGCAGGTATAAATCAGTATTTAAGCATTTTGTAAAACTTTTGTATTCTGTAGATTTAAATATGATATTCAGCCTTTTGTATGACAGTCACCATTAATGCATGAAAACTGGACAAGAACAATCTGATTTTGAAGTTTCATTAGAAAAGTTCGTTTATATCTCTATTTAACTATTTACATCAATACAGGGGTTGACATGAAGACTATAAAATGTTTCTACTCCTGTGAATGCTTTGTTTACtatttttcataatattatcGAAATTACgattaaagtgtttattttaga
>TCONS_00004993
GCGCGCGCGGCAGCTAGTTCGCGTGCTCACCACATACGCCCAAACTACGTACACAGGGCTCCTGTTTACCAGCCAAACCCCAGGAAAATTCACTCTGGTGATGTCAACAACATGGCACAATTTAAAGCGCAAAGTGGAGTTTCGTGACCACTTTAGATTGTGTTGATATTTGGGCAGCGGGAGCGAGCGGACGCACCGGGCACACGCGATGGAGCCGCGCATCAACAAAAAAGAGCTCCAGCACAGGGTGTTTGTGAACCGGAGTCTGACGCTTGAAAACATCAAGTGCTATGGCTTCGACATGGATTACACTCTGGCAGTTTATAAATCTCCAGAGTATGAGAGTCTGGGCTTTGAGCTGCTCAGGGACAGGCTTGTGTCCATTGGATATCCGCACGAGCTTCTGGGATATACATACGACTCTACTTTCCCCACACGAGGTCTGGTCTATGACACCACATACGGTAACCTGTTGAAAATAGACTCCAATGGAAACATTCTGGTCTGCACTCACGGCTTCGAGTACCTGAGAGGtgaaCAGGTGGATGAGTATTATCCAAACAAGTTCATCCAGAGAGACGACACTGACCGATTTTACGTCCTCAATACACTCTTCAACCTCTCAGAGACCTATCTTTACGCCTGCCTGGTTGACTTCTACACCAAAAGCACCAGATACAAGAATTGGCCGAAGGGGTTCAAACATGGTGACTTGTTCATGTCACACAGAAGCATGTTTCAGGACGTGAGGGACGCAATGGATCATCTTCACGACACTGGGACACTGAAGGAACGGACTCTGAAAAACCTGGACAAGTACGTCATTAAAGATCCTCGTATTCCTGTGTTACTGAGCCGCATCAAAGAGGTCGCTAAAGTGTTCCTGGCCACCAACAGCGACTTCAATTACACCGAGGCTATCATGAAATACTTACTGGATGCGGCGACAAGCTCTAAGGGCATGAAAAAGTCATGGCGCTCTTACTTTGACCTGGTGGTTGTGGATACGAGGAAGCCCTTGTTCTTCGCTGGAGGGACAGTTTTACGCCAAGTGGACACAGACACTGGGAAGTTGCGTATCGGCACGTACACCGGAGACCTCCAGCATGGGACGGTGTATTCTGGAGGATCTTCTGATCTAGTCTGTGACTTGCTGGATGTGAAGGGCAAAGACATCCTCTATGTGGGCGATCACATTTTTGGGGACATCCTGAAGTCCAAGAAGCGACAGGGCTGGAAGACGTTCCTTGTGGTTCCTGAGCTTGTGAAGGAACTGCATGTGTGGGCAGACAAATCCAGTATGTTTGAGGAGCTGAAACACCTCGACATCTTCCTTGCAGAGTTGTATCAGCATTTGGACAGTGGAAGTCAAGAGTGTCCAGATATCAGTGCGATCCAGACCAGGATAAAGATGGTGACGTACGGCATGGATCTGTGTTATGGGAAGATGGGCAGTTTGTTGCGCTGTGGCTCTACTAAAACACTGTTCGCCAGTCAGTTACTGCGGTATGCAGACATTTACTCAACCACCTGCCTTAACCTGCTTAACTACCCCTTCAGCTTCCTCTTCAGAGCCCCGCTCGTCCTGTTGCCACATGAGGCCGCTGTGGAGACTCAGAATAAAGAGCAGATGGCAGAGCTGTCAGAGCACATGCGCAGAACCAGCCTCAAGCAGCGTCAGTGTGAGTGTGAGGATGGAGATTGTGGACAAGATGACAACTGTGCCGCCAGAAACAGCGCTTCCACTTCAACTTCAGACAAATAGACATTTTCAGTTTGTTTACTGCTGTAAATAggcctatgatttttttttaacttgcataTGTTTTACCTTCACACGTTTCCATTGCTGTGTGTTGCTGTTCCATAGTTCCGCTCGGATATGTTTCCACTTCCGGCAGAAAGTAAACGGAATTAATTTGCCAAGTTTGCGATGTCTTATTGAGTTAACAGCTGTTATTTGTAAAGCAGGTATAAATCAGTATTTAAGCATTTTGTAAAACTTTTGTATTCTGTAGATTTAAATATGATATTCAGCCTTTTGTATGACAGTCACCATTAATGCATGAAAACTGGACAAGAACAATCTGATTTTGAAGTTTCATTAGAAAAGTTCGTTTATATCTCTATTTAACTATTTACATCAATACAGGGGTTGACATGAAGACTATAAAATGTTTCTACTCCTGTGAATGCTTTGTTTACtatttttcataatattatcGAAATTACgattaaagtgtttatttt
>TCONS_00004994
AAATTTGACATATTTCTCTAGCATCCTTCTTGTGGACATTTTTTGACCTTTCAGTGTGAACTATATAgcatttttgacacattttacatataaaatgagACCGGCTACACATATAATACAAGGCCTTATTTCACTTTTCTGTTACAAACTAAGTCATTTATTAATGACTATACTAATTCTAAACCACTAAATAAGTACTTTTAATTTAGTGTATCAAAATATGATCAGAACATGCACGCactgaataatgttttagtgGTTGTCttctgtaaataaatgaaaactaaaactgTACAGTTTAACAACAGTTCATGTACTGTTATGTAATGACTGTTCACTTTGACTGCTCTCTCTTTTTTTACCCATCAGGCATTTGGACAGTGGAAGTCAAGAGTGTCCAGATATCAGTGCGATCCAGACCAGGATAAAGATGGTGACGTACGGCATGGATCTGTGTTATGGGAAGATGGGCAGTTTGTTGCGCTGTGGCTCTACTAAAACACTGTTCGCCAGTCAGTTACTGCGGTATGCAGACATTTACTCAACCACCTGCCTTAACCTGCTTAACTACCCCTTCAGCTTCCTCTTCAGAGCCCCGCTCGTCCTGTTGCCACATGAGGCCGCTGTGGAGACTCAGAATAAAGAGCAGATGGCAGAGCTGTCAGAGCACATGCGCAGAACCAGCCTCAAGCAGCGTCAGTGTGAGTGTGAGGATGGAGATTGTGGACAAGATGACAACTGTGCCGCCAGAAACAGCGCTTCCACTTCAACTTCAGACAAATAGACATTTTCAGTTTGTTTACTGCTGTAAATAggcctatgatttttttttaacttgcat
>TCONS_00004995
TTACTGGATGCGGCGACAAGCTCTAAGGGCATGAAAAAGTCATGGCGCTCTTACTTTGACCTGGTGGTTGTGGATACGAGGAAGCCCTTGTTCTTCGCTGGAGGGACAGTTTTACGCCAAGTGGACACAGTGAGTTTCTGCCGTCAGCGAGGAGTGAAGTGTGCTGgacaaaaaaaatatacacaGGACACTGGGAAGTTGCGTATCGGCACGTACACCGGAGACCTCCAGCATGGGACGGTGTATTCTGGAGGATCTTCTGATCTAGTCTGTGACTTGCTGGATGTGAAGGGCAAAGACATCCTCTATGTGGGCGATCACATTTTTGGGGACATCCTGAAGTCCAAGAAGCGACAGGGCTGGAAGACGTTCCTTGTGGTTCCTGAGCTTGTGAAGGAACTGCATGTGTGGGCAGACAAATCCAGTATGTTTGAGGAGCTGAAACACCTCGACATCTTCCTTGCAGAGTTGTATCAGCATTTGGACAGTGGAAGTCAAGAGTGTCCAGATATCAGTGCGATCCAGACCAGGATAAAGATGGTGACGTACGGCATGGATCTGTGTTATGGGAAGATGGGCAGTTTGTTGCGCTGTGGCTCTACTAAAACACTGTTCGCCAGTCAGTTACTGCGGTATGCAGACATTTACTCAACCACCTGCCTTAACCTGCTTAACTACCCCTTCAGCTTCCTCTTCAGAGCCCCGCTCGTCCTGGTG

Function

symbol description
nt5c2l1 Predicted to enable 5'-nucleotidase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Is expressed in blood; eye; tail bud; ventral mesoderm; and yolk syncytial layer. Orthologous to human NT5DC4 (5'-nucleotidase domain containing 4).

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function
GO:0008253 5'-nucleotidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-8 Predicted to enable 5'-nucleotidase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Is expressed in blood; eye; tail bud; ventral mesoderm; and yolk syncytial layer. Orthologous to human NT5DC4 (5'-nucleotidase domain containing 4).

Ensembl:

ensembl_id ENSDARG00000034852

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004992 False 2218 mRNA 0.46 18 17460358 17484762
TCONS_00004993 False 2250 mRNA 0.46 18 17460361 17484764
TCONS_00004994 False 841 lncRNA 0.40 4 17460789 17463417
TCONS_00004995 True 717 mRNA 0.50 7 17462543 17466990

Neighbor

gene id symbol gene type direction distance location
XLOC_002685 NA coding downstream 17937 17437490 ~ 17442421 (-)
XLOC_002684 FP091248.1 coding downstream 117877 17342365 ~ 17342481 (-)
XLOC_002683 GNAZ coding downstream 176303 17254502 ~ 17284055 (-)
XLOC_002682 rab36 coding downstream 227986 17223681 ~ 17232372 (-)
XLOC_002681 depdc5 coding downstream 238275 17171604 ~ 17222083 (-)
XLOC_002687 slc2a11l coding upstream 1181 17485945 ~ 17501528 (-)
XLOC_002688 NA coding upstream 25216 17509980 ~ 17519034 (-)
XLOC_002689 BX927385.3 coding upstream 48846 17533610 ~ 17543022 (-)
XLOC_002690 ska1 coding upstream 58512 17543276 ~ 17550931 (-)
XLOC_002691 smarcad1b coding upstream 67969 17552733 ~ 17587901 (-)
XLOC_002678 BX324123.4 non-coding downstream 327448 17104298 ~ 17132910 (-)
XLOC_002676 NA non-coding downstream 371447 17085524 ~ 17088911 (-)
XLOC_002674 NA non-coding downstream 433247 17016799 ~ 17027111 (-)
XLOC_002692 BX927385.1 non-coding upstream 142364 17627128 ~ 17627253 (-)
XLOC_002694 NA non-coding upstream 246529 17731293 ~ 17745374 (-)
XLOC_002695 NA non-coding upstream 415547 17900311 ~ 17911539 (-)

Expression


Co-expression Network