G766820 (LOC106578118)


Basic Information

Item Value
gene id G766820
gene name LOC106578118
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7000344 ~ 7001765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU873180
TTTATTCTGAAAGGGGACCTAAGAAGACATATGctgattcacacaggagagaaaccattctcctgtggtgactgtgggaaaagcttcaatcGCAAGCAGACCTTAACTACACACAAACTAACTCACACCAGAGAGAAATCGTGTAGCTGTGgggactgtgggaaaagcttcaatcGGAAACATCATGGCTGCTCAGTCTGTGATAAAATATTAATTCAGAAGACTAATCTGCTAACACGTGAAAAACAACCACAAAGAAAGTGAATgaggacacagagaggagactaaGAGAGTATTGAGATACACCTGTGGACCAACTGAGGACATAGACACAGAGGGGACTAAGAGAGTATTGAGATACACCCAAGATCCCCTGTGGACCAACTGTAACTGGTTCTCCTGATCCTGCTCAGTCCAATGTCACAGTAATTATATAATGGGACTGTTGTCTGAACCTAACAGGCAATGTTGCTACTCTTTGTGTATGAAATGGACAATTTGCAGTTCCGACAACCACCAGTTTTTAGGTGAACAACTGGGAGATGATGTAGGAGAGTTGTGATCACTCAATGTCGTAGACAGATCTGTGGATACAAGATGTCCAGATCTGATGCAGGGTTTCCAATAGGCTGCCTGTTGGTGGTTTAATATGGCCCAAGTTTTCATGTGTAAATAGATTTACAGtaccaagggtttttctttatttgtactattttctacattgtacaataagtAGCCACCCAGGTGTATCCGATCTCAAGAAATTGTAGAAAACATCCCCCTTATGTAATCAATGTGAGCATTACTTAACCAGGGGAGTAGTGATTGGATAATGGGGAATGTTTTGTAACTAGGGGAGTAGTGATTGGATAAGGGGGATGTTTTGTAACCAGGGGAGTAGTGATTGGATAAGGGGGGTTGTAACCAGGGGAGTAGTGATTGGATAAGGGGGATGTTTTGTAACCAGGGGAGTGGTGATTGGATAAGGAGGGGTTGTAACCAGGGGAGTAGTGATTGGATAAGGGGGATGTTTTGTAACTAGGGGAGTAGTGAGTGGATAAGGGGGTATTCCTGTATTGTGTGAATCAGATGTAACTGGTTGAGGGAGGAGTTTACCAGCGAGGCTGGACTGTATATAAGTCATTGTTGGCAAGTCATTTTTCTTTGTCTGCAGACGGCCTGTTTTTAgaacctctttctctctggggCCTTTTTCCTAAATATTCTACTGctgtattttgttgttgttaactTGTTAACTTGTTATCCACACATGCAGGGTCATATAATTAGTATTTTCTTTAGGAGGAACAGGATTGTGTTTCCTGGAGGTGGAGAGTTGGGGAGACCATAGGATGTGTAGACTGATTATAAAGGGCTTTGCTTGAATAAATACTGGCTGTGCATTTCCTCTGGAGGGGC

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU873180 True 1422 lncRNA 0.43 1 7000344 7001765

Neighbor

gene id symbol gene type direction distance location
LOC110531380 LOC106578126 coding downstream 30487 6963142 ~ 6969857 (-)
LOC118966154 NA coding downstream 42564 6954992 ~ 6957780 (-)
LOC110531364 LOC106578119 coding downstream 93210 6885995 ~ 6907134 (-)
LOC110531366 LOC106578102 coding downstream 117432 6851197 ~ 6882912 (-)
LOC110510780 plcb3 coding downstream 165440 6636026 ~ 6834904 (-)
LOC110531378 LOC106578114 coding upstream 53070 7054835 ~ 7065193 (-)
LOC110531373 LOC106578114 coding upstream 66762 7068527 ~ 7071119 (-)
LOC118966172 NA coding upstream 70192 7071957 ~ 7074751 (-)
tmem179ba t179b coding upstream 359144 7360909 ~ 7379032 (-)
prox3 LOC106578142 coding upstream 381584 7383349 ~ 7390543 (-)
G766970 NA non-coding downstream 1719 6998069 ~ 6998625 (-)
G766967 LOC106578121 non-coding downstream 11859 6986110 ~ 6988485 (-)
G766966 NA non-coding downstream 14702 6985382 ~ 6985642 (-)
G766965 LOC106578116 non-coding downstream 14995 6984672 ~ 6985349 (-)
G766964 NA non-coding downstream 15945 6984140 ~ 6984399 (-)
LOC110531367 LOC106578116 non-coding upstream 2437 6970858 ~ 7054255 (-)
G766996 NA non-coding upstream 80162 7081927 ~ 7082698 (-)
G767002 NA non-coding upstream 105311 7107076 ~ 7107275 (-)
G767003 NA non-coding upstream 107598 7109363 ~ 7109608 (-)
G767010 NA non-coding upstream 124986 7126751 ~ 7126980 (-)
G766850 LOC106578109 other downstream 386932 6612079 ~ 6613412 (-)
G766749 NA other downstream 535713 6457203 ~ 6464631 (-)
G766665 NA other downstream 634816 6340621 ~ 6365895 (-)
G767056 ovol1 other upstream 243879 7245644 ~ 7251075 (-)
LOC110510419 LOC106560462 other upstream 1110823 8112588 ~ 8155916 (-)
G768390 NA other upstream 1187678 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 1219766 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 1277052 8277882 ~ 8283359 (-)

Expression


Co-expression Network