XLOC_026868


Basic Information

Item Value
gene id XLOC_026868
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58565159 ~ 58627544 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052508
TTCAACGCCAGAAATGGCTTCACAACTTGAGGTCAGAGATAACAGAGGAAGAGAAGATGAGCTCTGCATGTAAAATGAGTGGGTTTGAGGAGTCTCCTGTTGACCCTCAGAGAGCAGCATCTCCAGTGTTCAGCTGTGTGTCCATGAAGAGCAACAACTCCATGTATCAGCCTCCTGCATTCAGTGATGGATCTACTGTGAGATCTGAGTCTGGTGATCAATGGATGAAGCAATCAGGACAACAGCTCTGGCCTCATGAAAGTGAACTATGGAGGAATGAGACAAGACCTCAGCCCTGGCCTCATGAAAGTGAACTATGGAGGAACGAGACAAGACCTCAGCCCTGGCCTCATGAAAGTGAACAACAGAGGAACGAGACAAGACCTCAGCCCTGGCCTCATGAAAGTGAACAACAGAGGAACGAGACAAGATCTCAGCCCTGGCTTCATGAAAGTGAACAACAGAGGAACGAGACAAGACCTCAGCCCTGGTCTTTTGAAAATGAACTATGGATGAATGAGACAAGATCTCAGCTCTGGCCTCACAATCATCAAGCTTCACTGCAGACCTTCAGGCCTGTTTCTCCAGCTCAGCTTATGgatgcagtggctcagtggtggTCTTCTCAATGGTCATTCGTCCCGCAGGCTCCAGCTTGGTCTGTCAACCCACCAGCTCCACCACAGTCTTCAGGGTCTCTGTCTGTATCCAGACCCTTCACCCCTTCGCATCCAGCAGGATTCTCCATCTCCCCACACTGTTCCTCAGTTTCACCTCAAACTCTCCACTGGTCACCCAGACATACAAATATTCCCTGGTCAATTTGCACGTCTGAGATAACAGGGGAAAAGAAGATGAGTTCTGCGTGTGAAATGAGTGTGTTTGAGGGGGAAGAGGCTCCTGTTGACCCTCAGAGAGCAGCATCTCCAGTgttcagctgtgtgtctatgaagagcaacAACTCCATGTATCAGCCTCCTGCATTCAGTGATGGATCAACTGTGAGATCTGAGTGTGGAAAGAGACTGAAGCTGACTCCTGTTGACCCTCAGAGAGCAGCATCTCCATTATTCAGCTGCGTGTCTATGAAGAGCAACAACTCCATGTTTCAGCCTCCTGCATTCAGTGATGGATCTACTGTGAGATCTGAGTCTGTTATTGTCAGCAGAAGCAGAAAGAGCGCAGCGTCTCCAGTGTCCAGCGGTGTGTCCATGAAGAGCAATGCATCTATGAATTATCCACCAGCGTTCAGTAATGAATGTGTGAACATTGACCCTGTTAGTGAGAAAGCTGAGCAGATGAGAATTGTGTCCCATCAGACCTGCACATCCTCCAGGCAGAGTCACTTCAGTCTTCATGATGATCTTCAGAGAGTgaaagagcagcacaaaaccatCATGAAGATCAAGTACGAGAGCTTATTTGAGGGAGTGAAACTCCAGCAGAatcaaaccctcctgaacagcaTTTACACACAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggtgcTGCAGATGGAGAAGAGATACAAGACTCTCCAAGACACTCCAATcaactgcaatgacatctttaacccttcagctgaagcaggagatgaGGAGAAGAGCAGAGAGGAGAACGAgcagatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatctttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaGCATCTGGACTCACAGATTTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACTGTCAGAAAGTTTCTGATGTGACTGAAGCTTCATCAGTGAGTGTGTTGATGTCAAACCTCatgaaaggagatctgcttccctccgctctcatctggatcaccagcagaccagcagcagccaatcagatcccCTCAAAACACATCAGCCTCGTGACGGAGATTCAGGGCTTCAATgaccctcagaaggaggaatatttcaggaagagaatcagagATGAagatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcagccACTGTGCTTCAAACCATCCTGAGACAAGAtctgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctcctcattcagacacacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagacGTGATTGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctacgaggaggacctgattgagagcgggaTAGACGTCGCTGACgcctcagtgtattctgggatctgcactgagatcttcagAGAGGAATCTGTGATTTATCAGAGGAAGGTTTACAGCTTTGTTCATCTGAGCTTTCAGGAGTGTTTTGCAGCACTGTATGTGTTTTACTGCTATTTACACAACAACACTGAGGTGATGAAGATGTTCCTGACAGGGAAACACAGAACTCAGAGTGAGAAAGTTCCTCTGGATGTGCTTCTGAAAGGAGTGATGAATAAAGCCTTGAGGAGTAAAACTGGACACCTGGATCTGTTCCTGCGATTTCTTCAtggcgtctcactggagtccaatcagagactcttacAGGATctgctgaaacacacagagaacgaCCCAGAGATCATCAAGAAAATAATCTACAACCTCAAACGAGGACAAAAACACAACATCAGTCCTGAAAGATGGATGAATCTCTCACACTGCTTGATTGAGATGAAGGATAATTCCATTGTTGAAAAAATGCAGAGatttttaaagtctaaaaatatttttaaaaagctgacTCTTGCTCAGTGCTCAACTCTGGCAAACATGATCCTGATGTCAGAGGAGGTGATGGATACATTTGATCTTAAAAAGTACAGAATCAACTCAGAGGGCAGAAGGAGACTGTTACCAGCTATGAGGAACTGCAGAAAAGCTCTACTGTCAGGCTGTGATCTCACTGATCAGCTCTGTGAAGTTGTGGCTTCAGCTCTACAATCATCAAACTCCcccctgagagagctggacctgagtaacaatgagctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGATTGCCCTACTGTAATCTCACTGATCAGCACTGTGAAGTTGtgtcttcagttctacaatcaTCAAACTCCCCCCTGAGAGAGCTGCACCTGAATAACAATGAGCgccaggattcaggagtgaagctgatCTGTGCTGGACTGCAGAGCTCAAACTGTCAACTCAACACACCAAGATTGGTAGGCCGTAATCTCTCTGATCAGGACTGTGAAGTTCTGGCTTTAGCTCTTCAGTCATCAAGCTGGACTCTGAGaaagctggacctgagtaacagtgacctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGATTGTCAGGCTGTAATCTCACTGATCAGTGCTGTGAAGTTGTGTCTTCAGCTCTACTATCATCAAACTCCcccctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGATTATCCGGCTGTATGGTGTCAGAGGAAGGTTGTGCGgctctggcttcagctctgagcTCAAACCtgtcacacctgagagagctggatctgagctacaatcacccAGGAGAAGCAGGACTCAAACTGCTCTCTGACAAACTCCAACACCTCCACAAACTCAGGTAAGTGCTTTAATTCTGGAAAAGTAGATGAACAGCCCACTGGAGGCCTTTTCCAGACTGTAGGCTCTTCATCATCACATCTACTCATCCTCATATCATAATCGGCAT
>TCONS_00052223
ATGAGAATTGTGTCCCATCAGACCTGCACATCCTCCAGGCAGAGTCACTTCAGTCTTCATGATGATCTTCAGAGAGTgaaagagcagcacaaaaccatCATGAAGATCAAGTACGAGAGCTTATTTGAGGGAGTGAAACTCCAGCAGAatcaaaccctcctgaacagcaTTTACACACAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggtgcTGCAGATGGAGAAGAGATACAAGACTCTCCAAGACACTCCAATcaactgcaatgacatctttaacccttcagctgaagcaggagatgaGGAGAAGAGCAGAGAGGAGAACGAgcagatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatctttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaGCATCTGGACTCACAGATTTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACTGTCAGAAAGTTTCTGATGTGACTGAAGCTTCATCAGTGAGTGTGTTGATGTCAAACCTCatgaaaggagatctgcttccctccgctctcatctggatcaccagcagaccagcagcagccaatcagatcccCTCAAAACACATCAGCCTCGTGACGGAGATTCAGGGCTTCAATgaccctcagaaggaggaatatttcaggaagagaatcagagATGAagatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcagccACTGTGCTTCAAACCATCCTGAGACAAGAtctgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctcctcattcagacacacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagacGTGATTGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctacgaggaggacctgattgagagcgggaTAGACGTCGCTGACgcctcagtgtattctgggatctgcactgagatcttcagAGAGGAATCTGTGATTTATCAGAGGAAGGTTTACAGCTTTGTTCATCTGAGCTTTCAGGAGTGTTTTGCAGCACTGTATGTGTTTTACTGCTATTTACACAACAACACTGAGGTGATGAAGATGTTCCTGACAGGGAAACACAGAACTCAGAGTGAGAAAGTTCCTCTGGATGTGCTTCTGAAAGGAGTGATGAATAAAGCCTTGAGGAGTAAAACTGGACACCTGGATCTGTTCCTGCGATTTCTTCAtggcgtctcactggagtccaatcagagactcttacAGGATctgctgaaacacacagagaacgaCCCAGAGATCATCAAGAAAATAATCTACAACCTCAAACGAGGACAAAAACACAACATCAGTCCTGAAAGATGGATGAATCTCTCACACTGCTTGATTGAGATGAAGGATAATTCCATTGTTGAAAAAATGCAGAGatttttaaagtctaaaaatatttttaaaaagctgacTCTTGCTCAGTGCTCAACTCTGGCAAACATGATCCTGATGTCAGAGGAGGTGATGGATACATTTGATCTTAAAAAGTACAGAATCAACTCAGAGGGCAGAAGGAGACTGTTACCAGCTATGAGGAACTGCAGAAAAGCTCTACTGTCAGGCTGTGATCTCACTGATCAGCTCTGTGAAGTTGTGGCTTCAGCTCTACAATCATCAAACTCCcccctgagagagctggacctgagtaacaatgagctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGATTATCCGGCTGTATGGTGTCAGAGGAAGGTTGTGCGgctctggcttcagctctgagcTCAAACCtgtcacacctgagagagctggatctgagctacaatcacccAGGAGAAGCAGGACTCAAACTGCTCTCTGACAAACTCCAACACCTCCACAAACTCAGGTAA
>TCONS_00052224
GTCTGAGATAACAGGGGAAAAGAAGATGAGTTCTGCGTGTGAAATGAGTGTGTTTGAGGGGGAAGAGGCTCCTGTTGACCCTCAGAGAGCAGCATCTCCAGTgttcagctgtgtgtctatgaagagcaacAACTCCATGTATCAGCCTCCTGCATTCAGTGATGGATCAACTGTGAGATCTGAGTGTGGAAAGAGACTGAAGCTGACTCCTGTTGACCCTCAGAGAGCAGCATCTCCATTATTCAGCTGCGTGTCTATGAAGAGCAACAACTCCATGTTTCAGCCTCCTGCATTCAGTGATGGATCTACTGTGAGATCTGAGTCTGTTATTGTCAGCAGAAGCAGAAAGAGCGCAGCGTCTCCAGTGTCCAGCGGTGTGTCCATGAAGAGCAATGCATCTATGAATTATCCACCAGCGTTCAGTAATGAATGTGTGAACATTGACCCTGTGTGAGTATGACAAAATTGAGAATATGTAAATTTACTGAAGCATACATGTTGTCTAGATGTAactgtgtttgttgtttgtttgtttctgttttgtgtgttCAGTAGTGAGAAAGCTGAGCAGATGAGAATTGTGTCCCATCAGACCTGCACATCCTCCAGGCAGAGTCACTTCAGTCTTCATGATGATCTTCAGAGAGTgaaagagcagcacaaaaccatCATGAAGATCAAGTACGAGAGCTTATTTGAGGGAGTGAAACTCCAGCAGAatcaaaccctcctgaacagcaTTTACACACAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggtgcTGCAGATGGAGAAGAGATACAAGACTCTCCAAGACACTCCAATcaactgcaatgacatctttaacccttcagctgaagcaggagatgaGGAGAAGAGCAGAGAGGAGAACGAgcagatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatctttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttcaGCATCTGGACTCACAGATTTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACTGTCAGAAAGTTTCTGATGTGACTGAAGCTTCATCAGTGAGTGTGTTGATGTCAAACCTCatgaaaggagatctgcttccctccgctctcatctggatcaccagcagaccagcagcagccaatcagatcccCTCAAAACACATCAGCCTCGTGACGGAGATTCAGGGCTTCAATgaccctcagaaggaggaatatttcaggaagagaatcagagATGAagatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcagccACTGTGCTTCAAACCATCCTGAGACAAGAtctgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctcctcattcagacacacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagacGTGATTGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctacgaggaggacctgattgagagcgggaTAGACGTCGCTGACgcctcagtgtattctgggatctgcactgagatcttcagAGAGGAATCTGTGATTTATCAGAGGAAGGTTTACAGCTTTGTTCATCTGAGCTTTCAGGAGTGTTTTGCAGCACTGTATGTGTTTTACTGCTATTTACACAACAACACTGAGGTGATGAAGATGTTCCTGACAGGGAAACACAGAACTCAGAGTGAGAAAGTTCCTCTGGATGTGCTTCTGAAAGGAGTGATGAATAAAGCCTTGAGGAGTAAAACTGGACACCTGGATCTGTTCCTGCGATTTCTTCAtggcgtctcactggagtccaatcagagactcttacAGGATctgctgaaacacacagagaacgaCCCAGAGATCATCAAGAAAATAATCTACAACCTCAAACGAGGACAAAAACACAACATCAGTCCTGAAAGATGGATGAATCTCTCACACTGCTTGATTGAGATGAAGGATAATTCCATTGTTGAAAAAATGCAGAGatttttaaagtctaaaaatatttttaaaaagctgacTCTTGCTCAGTGCTCAACTCTGGCAAACATGATCCTGATGTCAGAGGAGGTGATGGATACATTTGATCTTAAAAAGTACAGAATCAACTCAGAGGGCAGAAGGAGACTGTTACCAGCTATGAGGAACTGCAGAAAAGCTCTACTGTCAGGCTGTGATCTCACTGATCAGCTCTGTGAAGTTGTGGCTTCAGCTCTACAATCATCAAACTCCcccctgagagagctggacctgagtaacaatgagctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGATTGCCCTACTGTAATCTCACTGATCAGCACTGTGAAGTTGtgtcttcagttctacaatcaTCAAACTCCCCCCTGAGAGAGCTGCACCTGAATAACAATGAGCgccaggattcaggagtgaagctgatCTGTGCTGGACTGCAGAGCTCAAACTGTCAACTCAACACACCAAGATTGGTAGGCCGTAATCTCTCTGATCAGGACTGTGAAGTTCTGGCTTTAGCTCTTCAGTCATCAAGCTGGACTCTGAGaaagctggacctgagtaacagtgacctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAACACACTGAGgttgtcAGACTGTAATCTCTCTGATCAGTGCTGTGAAATCATGGCTTCAGCTTTATTATCATCAAACTCCCCACtaagagagctggacctgagtaacaatgagctgcaggattcaggagtgaagctgatCTGTGCTGGACTGAAGAGCCCAAACTGTCAACTCAATACACTGAGGTACTGA
>TCONS_00052226
TGTTTCCACACACAGGTCAGAGATAACAGAGGAAGAGAAGATGAGCTCTGCATGTAAAATGAGTGGGTTTGAGGAGTCTCCTGTTGACCCTCAGAGAGCAGCATCTCCAGTGTTCAGCTGTGTGTCCATGAAGAGCAACAACTCCATGTATCAGCCTCCTGCATTCAGTGATGGATCTACTGTGAGATCTGAGTCTGGTGATCTATGGATGAAGCAAACAGGACCTCAGCCCTGGCCTCATGAAAGTGAACTGTGGAGGAATGAGACGAGACCTCAGCCCTGGCCACATGAAAATGAACTACAGAGGAACAAGATGATACCTCAGCCCTGGCCTCATGAAAGTGAACAACAGAGGAACAAGATGATACCTCAGCCCTGGGCTCACGAAAATGAACTACAGAGGAACAAGATGATACCTCAGCCCTGGGCTCACGAAAATGAACTACAGAGGAACAAGATGATACCTCAGCCCTGGCCTCATGAAAGTGAACTATGGAGGAACGAGGCAAGACCTCAGCCCTGGGCTTATGAAAGTGAACCATGGATGAATAAGACAAGACCTCAGCTCTGGCCTCATGATCATGAAGCTTCACTGCAGACCTTCAGGCCTGTTTCTCCAGCTCGGTTTAATGATCCAGTGGCTCAGTCGTGGTCT

Function

GO:

id name namespace
GO:0033500 carbohydrate homeostasis biological_process
GO:0042593 glucose homeostasis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000087306 ENSDARG00000097015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052508 False 4132 lncRNA 0.47 12 58565159 58627544
TCONS_00052223 False 2208 mRNA 0.45 3 58565263 58582663
TCONS_00052224 False 3142 mRNA 0.45 7 58565576 58585854
TCONS_00052226 True 655 lncRNA 0.49 2 58623923 58624902

Neighbor

gene id symbol gene type direction distance location
XLOC_026867 NA coding downstream 5978 58557312 ~ 58559181 (-)
XLOC_026865 unm_sa1261 coding downstream 21501 58506242 ~ 58543658 (-)
XLOC_026864 NA coding downstream 66131 58497271 ~ 58499028 (-)
XLOC_026863 NA coding downstream 88429 58472346 ~ 58476730 (-)
XLOC_026862 cdr2a coding downstream 109870 58430678 ~ 58455289 (-)
XLOC_026870 dhrs7ca coding upstream 6148 58633692 ~ 58650057 (-)
XLOC_026871 FP016018.3 coding upstream 26519 58654063 ~ 58673166 (-)
XLOC_026872 CU571382.3 coding upstream 32212 58659756 ~ 58661120 (-)
XLOC_026873 CU571382.2 coding upstream 42106 58669650 ~ 58670942 (-)
XLOC_026874 NA coding upstream 67146 58694690 ~ 58696104 (-)
XLOC_026861 NA non-coding downstream 261902 58300220 ~ 58303257 (-)
XLOC_026860 NA non-coding downstream 268610 58292309 ~ 58296549 (-)
XLOC_026881 NA non-coding upstream 1243982 59871526 ~ 59883486 (-)

Expression


Co-expression Network