G767056 (ovol1)



Basic Information


Item Value
gene id G767056
gene name ovol1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7245644 ~ 7251075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU873506
TTTTATACATTCCAGGAAATAGATTTAATATTGAGTAATAAGTGTCACCATGATTGTCATATAAAACACCGCCtgaacacacagacagcattCACAACCCATCAACCAATCAAAACAATCTTTTGGCGTTAACCGACAGCAAGGCAAGCTTTGCAACATGGTAAGGAAAGTCTTAGAAAGAAATAAACATTTTCAAATCTCCCTGTTTTACTGGCCGtagacaacaacaaacaaacgCAGTAGTGGTTTTTGATACAGTACACAACTAAATAGAACAATTTGATACAACAAGTTACATTTTTAGTGTGATAAACCCAAAAAAACAAAACCCCAGATACAACCAGGTCCGTATTTATTGCCACCCTGGATAAAGATAagcaaaaataaaacaatataacatactgagatatatttcattaaaaaaaaacaaaaaaaagtggaATTAAACTATTTTATAACAATACAATTTCTCAGAAAATGAGATTTTGTTGAACAGGAAATacgtacaacccccccccccccccccccccgcccccccccccccccctaaaaaaagaTTGGGGTTCTTGGCACACCTGTTGTCAATGCTCCAGCACCCTGCGAGGATAACACCACTGAGcccatttctaaaatgttttatgtgaCTGGAGAACACGTTGGGAGGGATCTTAATCCATTCCTCCACACAGAATCAAAAGCCCCGGGGACTGAGGTGACTATTGCAGCATTTAGATGTGTGGGTAAATGTTCGATTCGTCCTGGGGTTCATTATCATCTTGATGGAAGATCCATTTGTGTCAGCCTCCTTGGCAGAAGAAATCAGGtttttggcacacacacacagaaaaataatgtcctggtactggatAAAGTTCCTGATGCCCGTTGACCTTAAACAAGTGTCCCATGATCAGTGGAAACAAaacagccccataacatcaaaacATCCACCACCATGTTTTACAGTAGGTACGGAGGTTCGTTCCTGCATTTTCTTCTGTTCTTCAACGGCAAACCCACCACTGTTGTGCGTTGAGGAGCTCTATTTACAggtcatctgaccaaagcaccggTTCCAATGCCGTTTAGCAAACACCAGGCGGTGGAAACACCAGGCGGTGGAAACACCAGgccagatgacatgaaaatatagTTCTCTTTCGCTGAGCAATTGTattgatataaaaaaatataccaTTTCTCCATTTTGTTGAGCAGGCAATATCGCTCAGAATTAGTATTTTGTACAGAATTATTTTGCTAATCTGtatcaaggggggggggggggggggggggtaataatgACGGACCTgaccatacctacagtacagtcgtCATTCAAATGCCTGTCATCAATAGAAAAcatccctatccctctctctctaacgaTCATTGTGATCTCAGCAATGCAGAAAGCAGATCGCCATTTTGGTTCTCTTTAATTTATGAGTAGTCAGGCACTTAGAcagtagaaacacacacacaaactaaatgCAGATTCCCAATCTCTAATAACAATGCCACATACAACAAACAGAAAACCGCACATCAAACATATGAATATGAAAACCTACAACAAACGCTACTTACAGAAAAAACAACAGTGTTTTATAGTGGAGTTCTTTGTAACCCAAGAATCAGTCTAAATCCTATACTACACCTACAACAAATCTTAGCCTGGttctagatctgtttgtgttgtcttgtcagATGCAACAGGAGTTGGCTACACAGCAcgaaacagatctgagaccaggatAGAATAAACGAACTGTGCTTTTCCAGTATGCTAGCAGTAATCTCTTCCATCAGAAGTTATATCGCTTCAGAGTCCTACTGGATATGAATGTAAACACGACTGGCACTTTGTCTCGCAGTCTCGGTCTTTAAACAGTAGTTACTGTTATAGGACacagggttgggatcaattccatttaaattccagtcaattcaaatTGCACCTTTCAGAAGCTgtggcatcacccaggtgggtgctacaTGTTCGGCAATGGAGGTCCAGTACCTACAGAGGTCCAGTATCTACAGAGGACCAGAGGTCCAGTACCTACAGAGGACCAGTACCTACAGAGGAGCGGGTCCTGTGGAGGAGGAGCGGGTCCTGTGGTGGAGGAGCGGGTCCTGTGGTGGAGGAGCGGGTCCTGTGGTGGAGGAGCGGGTCCTGTGGAGGAGGAGCGGGTCCTGTGGAGGAGGAGCGTTGGAGAAGCAGGTGCGGTGCACTGATAAAGAGCTCTGGGTCTGTTTGTCAGactgtctttgtttctctctgtatcGTCgaggtcccctcctctctctgtatcgtcgaggtcccctcctctctctgtatcgtCGAGGTCCCCTCCTGTCTCTGTATCGTCGAGGTCCCATCCTCTGGAGCGACACTGCCTTTCCAATCCAAACGGCCTCAACTCCCAGCCTTCCATCCCAAGTCAAACAGAGACATTCAGTCTCTCCACCATCTCTATTTTAAAATTTGCTGTTTGTTTATTTTCCTTTTTATGTGTTTTGAGATTATTTTCTGTCATGAAAAGTGCTATACAAGATGAATAAATTATTATTGCTATTATTTATTCAAAGGCAACCCAAATTCCGATTCCAAATGTTGCTCATTGAAAAGCATTGGaaaacttcctgaattgactggaattgccCCCAACCTTTGCAGTAGTAGTATAGGGTAATGTAGTGACAGCACCTTACAGTGGTATAGGGTAATGTAGTCACAGCACCTTACAGTAGTATAGGGTAATGCAGTTACATCACCTTACAGTAGTATAGGGTAATGCAGTTACAACACCTTACTGCAGTATAGGGTAATGTAGTTACAACACCATGCAGTGATGTAGGGTAATGTAGTCACAGCACCTTACAGTTGTATAGGGTAATGTAGTTACATCACCTTACTGTAGTATAGGGTAATGTAGTTACATCACCTTACTGTAGTATACGGTAATGTAGTTACAGCACCTTACTGTAGTATAGGGTAATGTAGTTACACCACTTTACAGTAGCATAGGGTAATGCAGTTACATCCCCTCACAGTAGTATAGGGTAATGTAGTTACAGCACCTTACAGTAGTATAGGGTAATGTGGTTACACCACTTTACAGTAGTATAGGGTAATGTAGTTACACCACTTTACAGTAGTATAGGGTAATGTAGCTACACCACTTCACAGTGTATAGGGTAATGTAGTTACATCACCTTactgtagtatagggtagtgtagttACAACACCTTACTGTAGTATAGGGTAATGTAGTTACAGCACCTTGCTGTAGTATGGGATAATGCAGTGTCAACACCGTACAGTGGTATAGGGTAATGTAGTTACAGCACCTTACTGTAGTATAGGGTAATGTAGTTACAGCACCCTACAGTAGTATAGGGTAATGTAGTTACAGCACCCTACAGTAGTatatggtaatgTAGGGTAATGTAGTTACAGCACCCTACAGTAGTATAGGGTAATGTAGTTGTGCAAAAGATTTCTTACAGCATACCGTTTTCCCTTTTCAGAAGTGTAAACCCAAAAACAAACATTGTCTCTTTTTATCAATCAAATTCATAACATACACATATTCAATTTataacaaaataaatatattaaacCCTTTActgcataatatatatatatatatatatatgtttttcttGATAAGAACCATAACAATCTCAAACTAGACATAATCTCAATCCTAATCTCACACGTTGCCACTACGTTAGATTTCATTTACATCTACCTGGGTCGttttcattaggcaccaaaccgAAGTAAATGGCCTGAAACAGGCAGAGACGACCTTGCATCTGTCCAATAGGAAACGTTAAATTGTCATGAACACATTACTTTAcatgccctaatgaatacgaccctgtaGATGGTTTTGTCAAAAACGCaactccctctcctcatccctccctctctccctctactgccccctccctccctccctctactgccCCCCTGATCCTGTAGTATCATCACTATATTGACTGTTCGAAAGCGGCGACCCAGGCATTGACTCCtcacccccctcaccccctctcccccccttcgCCCTCAGGAAGGCGGAGTTGGGGTGGAGGGCGTGGTAGTGTTTGAGCAGTACATCCTGGGAAGAGGCGGTGTGGCCACACTCCTCACAGACGTAGAGTTTGTTGCGTCTCTCCTTATAGGCGTACTGCAGGGTCACACCGTGGATCTTCTTCATGTGAGACTCTAGAGAGCAACGCTGGGTGAAGGCCTTGTCACACAGAGAGCACTTGTAGGGACGCACtcctagagggagagagggactggattagag

Function


symbol description
ovol1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in epidermal cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including negative regulation of stem cell proliferation; negative regulation of transcription by RNA polymerase II; and regulation of meiotic cell cycle. Predicted to be active in nucleus.

NR:

description
transcription factor Ovo-like 2, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU873506 True 4329 TUCP 0.43 7 7245644 7251075

Neighbor


gene id symbol gene type direction distance location
LOC118966172 NA coding downstream 170893 7071957 ~ 7074751 (-)
LOC110531373 LOC106578114 coding downstream 174525 7068527 ~ 7071119 (-)
LOC110531378 LOC106578114 coding downstream 180451 7054835 ~ 7065193 (-)
LOC110531367 LOC106578116 coding downstream 191389 6970858 ~ 7054255 (-)
LOC110531380 LOC106578126 coding downstream 275787 6963142 ~ 6969857 (-)
tmem179ba t179b coding upstream 109834 7360909 ~ 7379032 (-)
prox3 LOC106578142 coding upstream 132274 7383349 ~ 7390543 (-)
snx15 snx15 coding upstream 156218 7407293 ~ 7426803 (-)
LOC110515519 LOC106578133 coding upstream 554426 7805501 ~ 7873725 (-)
LOC118965986 NA coding upstream 809509 8060584 ~ 8061856 (-)
G767047 NA non-coding downstream 28273 7217045 ~ 7217371 (-)
G767034 NA non-coding downstream 29050 7188290 ~ 7216594 (-)
G767001 NA non-coding downstream 38160 7206415 ~ 7207484 (-)
G767020 NA non-coding downstream 99767 7145590 ~ 7145877 (-)
G767017 NA non-coding downstream 108378 7136498 ~ 7137266 (-)
G767434 NA non-coding upstream 29845 7280920 ~ 7281236 (-)
G767445 NA non-coding upstream 44596 7295671 ~ 7296059 (-)
G767461 LOC106583515 non-coding upstream 77825 7328900 ~ 7332927 (-)
G767460 NA non-coding upstream 85675 7336750 ~ 7337789 (-)
G767463 NA non-coding upstream 87680 7338755 ~ 7339130 (-)
LOC110531366 LOC106578102 other downstream 363526 6851197 ~ 6882912 (-)
G766850 LOC106578109 other downstream 632232 6612079 ~ 6613412 (-)
G766749 NA other downstream 781013 6457203 ~ 6464631 (-)
G766665 NA other downstream 880116 6340621 ~ 6365895 (-)
LOC110510419 LOC106560462 other upstream 861513 8112588 ~ 8155916 (-)
G768390 NA other upstream 938368 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 970456 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 1027742 8277882 ~ 8283359 (-)
G768780 NA other upstream 1731393 8982468 ~ 8990706 (-)

Expression



Co-expression Network