G767461 (LOC106583515)


Basic Information

Item Value
gene id G767461
gene name LOC106583515
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7328900 ~ 7332927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU874085
CTCTTTCAGTTGAAGGGGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGGGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGGGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGAGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGGGAATAGAATGTTCCGTCTACTTCTGTCTTTCAGTTGAAGGAGAATGgaactctccttctccctttgttccatGGAAGACAAAATAAAAAGCAGATTCTCTGTTGTGTCTCCAGCATCCTGTCTGTCTTGCCCTCCACTCCTCTGACTTCAGAGAGCAGATCCTAAactgtccatctctcctcttcctacgCATCCGTTCTTCTAGGCtttgtcccaaaaggcaccctgttccctttacagTGGCTAGCCTCTTCGCTCTGGGAGACCTGGAACTTTACACACTGATCTCCCGTACCCCTAAAAACATATTTACCAGCCCTCTCTCTAGTTGACCTAAATAATGTgtgaaaataaacatttatttccaACTTTTCCTGAGTTGACCGAATTCACACCATATCTCCCTAAAAAGTGGTGTGCTGCCATCTGGGATCAGGCGgtaatctatactgaacaacaatatgaACGCAACATACAAAGCTTCCAacgatttgactgagttacagttcatatgaggaaaccAGTCAATTGAATCAAATTcatcaggccctaatctatggatatcacatgactgggaatatacatatgcatctgttggtcagagatatcctttaaaaaaaggtagaggcgtggatcagaaaaccagccagtatctggtgtgaccatttgcctcatgcagcgcgacacgtCTCCTTCACATAGGgttgatcaagctgttgattgtggactgtggaatgttgtcccactcctcttccatGGCTGAGTGAAgtggctggatattggcgggaactggaacacgctgtcgtacttgtcgatccagagcatcccaaacatgctcaacgggtgacatgtctggtgagtatgcagaccatggaagaactgggacattttcagcttccaggaatcgtgtacagatccttgagatATGGGGCCGTGTGCATTATTACGCTGAAACATGAGgggatggcggcagatgaatggcaacaacaatgggcatcaggatctcatcactgtatctctgtgcattcaaattgccaaagataaaatcaaattgtgttcgttgtccgtagctcataccataaccccaccgccaccatgttgcactatgttcacaatgttgacatcaacaaaccgctcacccacacgacccCATACACGCTGTGTACCATCTgtctggtacagttgaaactgggattcatccgtgaagagcacacttctccagcgtgccagtggccatcaaaggtgagcttTTGCCCTCTGAAGTCGGtgacgacgccaaactgcagtcagatcaagaccctggtgaggaagacgagcagatgagcttccctgagagtttgtgcagaaattatttggttgtgcaaacccacagtttcatcagttgtcttGGAGGCaacccgcaggtgaagaagtcggatgtggaggtcctgggttggcgtggttacatgtggtctacggttttgaggccggttgaaagtactgccaaattctctaaaatgtcgttggaggcggcttatggtagaaaaagcAACATTGAATTCcttggcaaaagctctggtggacattcctgcagtcagcatgccaattgcacgctccctcaaaacttgagtcgTGGCATTgtcttgtgtgacaaaacagcacattttagagtggccttttattgaacccagcacaaggtccacccatgtaatgattatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttggcaaagaagaaaggctcactaacaggggatgtaaacaaatttgtgcacaacatttgagagaagtcAGCCTTttatgcgtatggaacatttctgggatcttttctttcagctcatgaaacatgggaccaacactttacacgttgcgtttatattttttgttcagtgtagcgtTGGAAATTATTACATGTCAATTGTTTATTTTGACCACAGCTCACACACTGTATAGCCCAAAACGACTGGTAAGGCATCCCGGATTCTAGATTTGCCAATAGGtcaaccagaggtctgtttaaatgTGTTTTTCGGGGTACTGGGATGTCGCCGTCAGCAACGAGAGATCTATGTGCAGTATAGGTCTCCCAGAGAGAAGAGCActaactagggaatagggtgcatctATCCTTCTATAGAGCCTCCCACAGTATCCTACAGCAtcctacagtatcctacagtatCCTACAGCATCCTACACTATTCTACAGCATCCTACAGCATCCTACGGTATCTTACAGTATCCTACAGCAtcctacagtatcatacagtattcTACAGCAtcctacagtatcctacagtatCCTAGAGCATCCTACAGTATCCTACGGTATCCTACAGTATCCTACAGCATCCTACGGCCTCCCACAGTATCCTACAGTATTCTACAGCATCCTACAGCATCCTACAGCATCCTACGGTATCCTACAGTATCCTACAGCAACCTACAGTATCCTACAGCCTCCCACGATATCCTACAGTATCCTACAGCATCCTACGGTATCCTACAGCCTCCCACGATATCCTACAGTATCCTACAGCATCCTACGGTATCCTACAGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatactacagtatccTACGGTATCCTACGGTATCCTACGGCATCCTACGGTATCCTACAGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatACTACGGTATCCTACGGTATCCTACGGTATCCTACAGTATCCTACGGTATCCTACAGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatACTACGGTATCCTACGGTATCCTACAGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatCCTAGCATAGATATCTGGAAAACAAACATTCCAATGTGCAGTCAACGGCCTTCCGCTTAAGACTACTCTCTCACtccactctcactcactctctgtctttctctctctcactccaagcctctctccacccccccctctctctgtctttctttctctcactccaaGCCTCTCTCCAgccctttttttctccctccctcttctcctcttcctacatccctatctctctccaccccccgctctctctgtctttctcgctctcactcagcctcgcctctctctctctcgtctctctgtctttctctctctctcactcagcctcgcctctctcgtctctctgtctttctctctctctcactcagcctcgcctctctctctctcgtctctgtctttctctctctctcactcagcctcgcctctctctctctcgtctctctgtctttctctctctctctgcctctctctctctgcctctctctctcactccaagcctctctccatccctttcttactccctccctcttctcctcttcctacatccctccccccacccccccccccctctctcataccAATATCTTCCCTTTCTCTCAGTTGATTTACATCTCTTTCTTGTCCTGTACTACAATATCCCCTCCTTTCCACTGTCTCTCAGACAACCATTCTTTTCTGTCAGTCTACTATTGTGTCCATCACGTCATCTCCACCGTGGCAGCTCTCCTCTCCGTGTACGATCAACACCGGGAAGAAAAACGCATCGTGGTAAGACGGAGGCCTATCCCTCACCCCCTCATCCACCTCTCCTCCGCCCTCCTGCTCttcttcct

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU874085 True 3974 lncRNA 0.47 2 7328900 7332927

Neighbor

gene id symbol gene type direction distance location
LOC118966172 NA coding downstream 254149 7071957 ~ 7074751 (-)
LOC110531373 LOC106578114 coding downstream 257781 7068527 ~ 7071119 (-)
LOC110531378 LOC106578114 coding downstream 263707 7054835 ~ 7065193 (-)
LOC110531367 LOC106578116 coding downstream 274645 6970858 ~ 7054255 (-)
LOC110531380 LOC106578126 coding downstream 359043 6963142 ~ 6969857 (-)
tmem179ba t179b coding upstream 27982 7360909 ~ 7379032 (-)
prox3 LOC106578142 coding upstream 50422 7383349 ~ 7390543 (-)
snx15 snx15 coding upstream 74366 7407293 ~ 7426803 (-)
LOC110515519 LOC106578133 coding upstream 472574 7805501 ~ 7873725 (-)
LOC118965986 NA coding upstream 727657 8060584 ~ 8061856 (-)
G767445 NA non-coding downstream 32841 7295671 ~ 7296059 (-)
G767434 NA non-coding downstream 47664 7280920 ~ 7281236 (-)
G767047 NA non-coding downstream 111529 7217045 ~ 7217371 (-)
G767034 NA non-coding downstream 112306 7188290 ~ 7216594 (-)
G767001 NA non-coding downstream 121416 7206415 ~ 7207484 (-)
G767460 NA non-coding upstream 3823 7336750 ~ 7337789 (-)
G767463 NA non-coding upstream 5828 7338755 ~ 7339130 (-)
G767468 NA non-coding upstream 10004 7342931 ~ 7343147 (-)
G767420 NA non-coding upstream 48628 7381555 ~ 7383075 (-)
G767056 ovol1 other downstream 77825 7245644 ~ 7251075 (-)
LOC110531366 LOC106578102 other downstream 446782 6851197 ~ 6882912 (-)
G766850 LOC106578109 other downstream 715488 6612079 ~ 6613412 (-)
G766749 NA other downstream 864269 6457203 ~ 6464631 (-)
LOC110510419 LOC106560462 other upstream 779661 8112588 ~ 8155916 (-)
G768390 NA other upstream 856516 8189443 ~ 8191898 (-)
LOC118936684 LOC106578100 other upstream 888604 8221531 ~ 8253809 (-)
LOC110531377 LOC106578102 other upstream 945890 8277882 ~ 8283359 (-)
G768780 NA other upstream 1649541 8982468 ~ 8990706 (-)

Expression


Co-expression Network