G768402


Basic Information

Item Value
gene id G768402
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8220971 ~ 8221277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU875266
NACAGTATAGTAGTGTATATgtagggtctggataggtataaacagtatagtggtggggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtatagtagtgtatctgtagggtctggataggtataaacagtatagtagtggatctgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaac
>TU875267
NACAGTATAGTAGTGTATATgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtatagtagtggggtctggataggtataaacagtatagtagtgtatctgtagggtctggataggtataaacagtatagtagtggatctgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaac
>TU875268
NACAGTATAGTAGTGTATATgtagggtctggataggtataaacagtatagtggtggggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtatagtagtgtatctgtagggtctggataggtataaacagtatagtagtggatctgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaac
>TU875269
NACAGTATAGTAGTGTATATgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtatagtagtggggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtatagtagtgtatctgtagggtctggataggtataaacagtatagtagtggatctgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaac
>TU875270
NACAGTATAGTAGTGTATATgtagggtctggataggtataaacagtatagtagtggggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaacagtatagtagtgtatctgtagggtctggataggtataaacagtaTAGTGGTGTATCTgtagggtctggataggtataaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU875266 False 235 lncRNA 0.39 2 8220971 8221277
TU875267 False 235 lncRNA 0.39 3 8220971 8221277
TU875268 False 275 lncRNA 0.39 2 8220971 8221277
TU875269 False 275 lncRNA 0.39 2 8220971 8221277
TU875270 True 195 lncRNA 0.38 3 8220971 8221277

Neighbor

gene id symbol gene type direction distance location
LOC110510419 LOC106560462 coding downstream 65055 8112588 ~ 8155916 (-)
brms1 LOC106560445 coding downstream 110405 8083612 ~ 8110566 (-)
LOC118965985 NA coding downstream 151747 8067827 ~ 8069224 (-)
LOC118965983 NA coding downstream 153248 8066300 ~ 8067723 (-)
LOC118965984 NA coding downstream 156947 8062226 ~ 8064024 (-)
LOC118936684 LOC106578100 coding upstream 254 8221531 ~ 8253809 (-)
krcp LOC106578101 coding upstream 33518 8254795 ~ 8266598 (-)
LOC110531377 LOC106578102 coding upstream 56605 8277882 ~ 8283359 (-)
LOC110531375 LOC106578102 coding upstream 62801 8284078 ~ 8288596 (-)
LOC110531374 LOC106578102 coding upstream 69964 8291241 ~ 8295354 (-)
G768399 NA non-coding downstream 5962 8214246 ~ 8215009 (-)
G768391 NA non-coding downstream 27062 8193703 ~ 8193909 (-)
G768389 NA non-coding downstream 32159 8187686 ~ 8188812 (-)
G768388 LOC106578116 non-coding downstream 35967 8184572 ~ 8185004 (-)
G768387 NA non-coding downstream 38506 8182249 ~ 8182465 (-)
G768406 NA non-coding upstream 1587 8222864 ~ 8223571 (-)
G768407 NA non-coding upstream 2658 8223935 ~ 8225053 (-)
G768414 NA non-coding upstream 18993 8240270 ~ 8247410 (-)
G768425 NA non-coding upstream 54896 8276173 ~ 8276485 (-)
LOC118965987 NA non-coding upstream 98044 8318999 ~ 8321009 (-)
G768390 NA other downstream 29073 8189443 ~ 8191898 (-)
G767056 ovol1 other downstream 969896 7245644 ~ 7251075 (-)
LOC110531380 LOC106578126 other downstream 1251280 6963142 ~ 6969857 (-)
LOC110531366 LOC106578102 other downstream 1338853 6851197 ~ 6882912 (-)
G768780 NA other upstream 761191 8982468 ~ 8990706 (-)
G770225 NA other upstream 2153432 10367459 ~ 10375854 (-)
G770549 NA other upstream 2751096 10972373 ~ 10974413 (-)

Expression


Co-expression Network