Fish Transcriptome and Expression Database

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model fish

XLOC_026892 (AL954150.1)

Basic Information

Item	Value
gene id	XLOC_026892
gene name	AL954150.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	60451500 ~ 60451628 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052254
ttgagaaactgttctactgtgaTAACCCGCAGCTTGCTCTCACATGCtcgctcactgaagctaagcatggctgcgcctggtcagtacctggatgggagaacacatgggaaagctaggttgctgcctaCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085668

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00052254	True	129	rRNA	0.53	1	60451500	60451628

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_026891	si:ch211-214b16.4	coding	downstream	49674	60338988 ~ 60401826 (-)
XLOC_026890	si:ch211-214b16.2	coding	downstream	135382	60314274 ~ 60316118 (-)
XLOC_026889	si:ch211-214b16.3	coding	downstream	142563	60285115 ~ 60308937 (-)
XLOC_026888	si:ch73-364h19.1	coding	downstream	276030	60146309 ~ 60175470 (-)
XLOC_026887	si:ch211-120g10.1	coding	downstream	308970	60129848 ~ 60142530 (-)
XLOC_026893	si:ch73-366l1.5	coding	upstream	74354	60525982 ~ 60571218 (-)
XLOC_026894	jmjd6	coding	upstream	123485	60575113 ~ 60589292 (-)
XLOC_026895	NA	coding	upstream	142507	60594135 ~ 60602432 (-)
XLOC_026896	ubald2	coding	upstream	233281	60684909 ~ 60711127 (-)
XLOC_026897	anks4b	coding	upstream	361223	60812851 ~ 60827402 (-)
XLOC_026886	NA	non-coding	downstream	323939	60126527 ~ 60127561 (-)
XLOC_026885	NA	non-coding	downstream	382549	60067382 ~ 60068951 (-)
XLOC_026884	NA	non-coding	downstream	395741	60036101 ~ 60055759 (-)
XLOC_026881	NA	non-coding	downstream	568014	59871526 ~ 59883486 (-)
XLOC_026874	NA	non-coding	downstream	1755396	58694690 ~ 58696104 (-)
XLOC_026899	NA	non-coding	upstream	405394	60857022 ~ 60861145 (-)
XLOC_026901	NA	non-coding	upstream	497940	60949568 ~ 60956010 (-)
XLOC_026917	NA	non-coding	upstream	1347495	61799123 ~ 61844869 (-)
XLOC_026921	NA	non-coding	upstream	1747560	62199188 ~ 62201944 (-)

Expression

Co-expression Network