G770035


Basic Information

Item Value
gene id G770035
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9868730 ~ 9871142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU877178
CACATTAGAATTATattttaataataaataaatagcaGCATCACACGGAAATGAAATAAAAAACATTGTCGTGTGGATGACTAAAGTTGTAAAAACATGAGAAGTGTCATTGACGGATATTCACAAGTAAATGGTCTAAAAAAAATGCCGATTGATTTGATCGTAACGTAAGGGGGTTGACACATAAAAGATCTCTAACTCTGGCCCGGGGCATTATGCTGGTTTCACAACAAGTGGTAAACTCTGAAAACACTACTTGTAAAACTGGGAGCAACCAGTTTACAACCAGCAATGCGTTCACATGCTTTGAGCTAGTTAAGAACGCCAATCGGCTGATTGGCAAACAAGTTGTATCAACCGTAGACTAAAAGTACAGCCATCATGCTCGTCAACAAATTACAATGTTCAACAAACATATCCAGagattttttacatttgttaAATTAAATGATGCTTTGTTGTTGCATTTAGCTGCTGAAAATGCTGTTATGAAGGTCATTTCCTTAGTAGGTGACgtcagaggtcagcatgtgggagaagtcGTAGCTCAGGGATGATGGATGAGTTTCCCCACTGGTAATTACCAGTTAGAGGGCCGTTCAAACTGGATTTTTCCCAGTCGTATGCCCTTAGTTACGAATTTGAGAGATTTCACGAGCGCAGCGTTAGTTTGGCAACGCTGAGAAGAGGATGCTCtaatgccctggaccagagctctATCCTACACACACGGTTACGGATCACATATACAGCTTCAAATACATTGTTTAAGCAAACTGGTTTCGCAAACTGATTTCGGATCAAACCAAAACCCGATTCTTTCAGGGGGGTTTTCTCTCGGCGTCCTCTTCTCTCTGCACTCCTCTTTATTAGTTTTAGTTTCGTTTTTTTTGCTCAACTTCATGTCAAACGTGGCAAAGGGCCTGTAGTCCTATTGACCTCTGTCTTTTGTCTGGAAAAAACTCCAACGTTCCTAGTGATCGGTTAGGCCTATTGTTCCATCTTCCTTACTTAGGAGCTAGACAGTGtgcatcttaaatggcaccctattccctacatggggCACTACTTttatcagagccctatggtccctggtgaaaagtagtgcactatatagagaatagggtgccatttgagacgtagcCAAAGTGtgttaaaataaaacatttgacctGTGTGTGACCTGTGTAGAGGGGTCAGAGGTTGTCATAGGTAGTACATTCAGTCAGATGCTCTGGTGTTTTGGTTGTGGTTGTGGCAGCGTTGAGTATGAGTTGTAGGGATAACTTTCAGGGTGTATGTGGGTTATATAGGCCCATAGGGTTACTCATATAATGTAGATTGGGTTATGGTGAGGTTTGTTCTATGATAGGGTTATAGCCTATGCTTTTAGTTGAGTTTTGATCACAgctacaaatgtaggatcttaatttgagccagtttgacAGAGTAGGAAAACAATACTGCAGCAATagcaaatgtgaattattatatggattataattaatggacaattttttgtAAGAGTTAATCatttttttgttagggcaaatcgaatctggacattttaaagtggacattacaaactttagaagcattttttttaaaccttgagtACACAATAAGTTAGCATTTCCTGCCGAGCAGGAAAATGATCAGCAACAAAAAAggtgctcaaattaagatccggcATCTGTATGGTTGGGGTTATGTTCTGGTCAAGGCCTGGAGTTAGGCTGGCGGTGAGGGACCAAGACAATCCCTCTGAGACCTGTATCCAGAAAGACTCTCAGAGTGCTGATCATCCTTAACTGGACTGGGTTTGATCCGTCTTCTCAAGGACTGCCTGCCGTGGCCATCAGTATGAGGTAATACATTATGACGTGTGAGAGAGATCCATTGTACTGAGACCAGTGTTTCCAACCCCTTCATCCACCCTCATGTAAGCATTAAAATAAGTCAATCCTAAcctcagatctaggatcaggttaccCAACTCCCAACAATTTGACCCTGTATCAGTGGTCAGGGCCATTGACTTCTACCTACACAGTCTACTCATTTTAATGAGGTGGGTTCTTGGTGCTACCCCCTGTCTCACCACAAGGTGGCACTGTGACGGTCATTGGGGCTATAGTAACCTTTCTCCAGTCATCATTACCAGTCTCCCTAGTAACCATTATAGACTTGTTTTATACACACTGGAAAAAGCTCCATTCAGACCTGTTGTATTGTTATGtcgtgtccatggtgctgaatttTCACTAAGATCCATTACACAATAAGTTAGACTGCATTTGACTATGGAAGCATCTgacatggaaccctattccctatgtagtggatcaaacgtagtgcactgtgtagggaatagggtgccattcaggaCATAGACTATGAAGTCTCGAGTTTC

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU877178 True 2413 lncRNA 0.41 1 9868730 9871142

Neighbor

gene id symbol gene type direction distance location
LOC110531417 LOC106578044 coding downstream 520472 9294764 ~ 9348258 (-)
bmp15 LOC106578107 coding downstream 761271 9104234 ~ 9107459 (-)
leap2 leap-2a coding downstream 781433 9083247 ~ 9145704 (-)
phka1a LOC106578056 coding downstream 791367 9023713 ~ 9077363 (-)
LOC118966157 NA coding downstream 1151392 8702038 ~ 8717338 (-)
LOC110531429 LOC106578053 coding upstream 112350 9983492 ~ 9988450 (-)
LOC118965989 NA coding upstream 246618 10116536 ~ 10130445 (-)
LOC118965990 NA coding upstream 264387 10135529 ~ 10137709 (-)
LOC110531425 LOC106578047 coding upstream 269481 10140623 ~ 10213285 (-)
LOC110531433 LOC106578048 coding upstream 370083 10241225 ~ 10247265 (-)
G770033 LOC106578039 non-coding downstream 1914 9866462 ~ 9866816 (-)
G770032 NA non-coding downstream 2633 9865778 ~ 9866097 (-)
G770031 NA non-coding downstream 3347 9865128 ~ 9865383 (-)
G770027 NA non-coding downstream 14118 9854356 ~ 9854612 (-)
G770026 NA non-coding downstream 17036 9851429 ~ 9851694 (-)
G770047 NA non-coding upstream 25800 9896942 ~ 9897324 (-)
G770063 NA non-coding upstream 62332 9933474 ~ 9938922 (-)
G770065 NA non-coding upstream 70046 9941188 ~ 9942957 (-)
G770067 NA non-coding upstream 73995 9945137 ~ 9945473 (-)
G770068 NA non-coding upstream 74383 9945525 ~ 9945805 (-)
G768780 NA other downstream 878024 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 1585406 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 1615975 8221531 ~ 8253809 (-)
G768390 NA other downstream 1676832 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 1754660 8112588 ~ 8155916 (-)
G770225 NA other upstream 503567 10367459 ~ 10375854 (-)
G770549 NA other upstream 1101231 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 1236686 11107828 ~ 11108159 (-)
G771457 NA other upstream 1757474 11628616 ~ 11629588 (-)
LOC110531452 LOC106577886 other upstream 1827257 11698392 ~ 11701613 (-)

Expression


Co-expression Network