G770225


Basic Information

Item Value
gene id G770225
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10367459 ~ 10375854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU877409
CCCCGGTCCCCCAGCCACTTACCCATGAAGCCAGCAGGGTAGGTGATATCAGTGCGGACTTTGCCGTCGATCTTAATGAACCTTTGCATGCAGATCTTCTTGACCTCATCTCCGGTCAGGGCGTACTTCAGACGGTTCCTGAGGAAGATTATGAGAGGCAGGCACTCCCTCAGCTTGTGGGGACCAGTGGAGGGGCGAGGAGCGAACACTCCGGTGAGCTTGTCAAGCATCCAATGCTTGGGCGCTGCAACGCGCTTCAGGTGCTTCTTCGGTCCTCGTGCCATGTTGGAGTCTGCGAGGAAAAGGACCTCCCACTTCGAGTCCT
>TU877412
ggctgtaacgcaaccaAATATGGataaagtcaagtggtctgaatactttccgattgctCTGTATACAGGACAAGGGATCCGACTGAAATCACGCACGCCATTTATTTACACAAGGAGGTAGAAAAACAACCATTTCACATTAGGAGTCAGTTAATTATTTTGTTTGGAGCTCAGAACTTCTTAGAGGTATTGGTGAGGGGTTTTTTTTTCAGCTCGTTGATCAAAACCAAAGTGTGTCTTCATTGCTCCGTCATACAGACGAGTCGGCCAATTATAATGGTACtgctcaacaacaacaaccacccggTAGGGTTATGCGGTGACAGCGTGCGTCATACCTGGGCCTCCTCAGCAGTGATGCGGTGAACCGTGAAACGTCCCTTCACATCGTAGATCAGACGGAAGTGCTCTCCAGTCTTCTCAATACTGATCACATCCATGAAGCCAGCAGGGTAGGTGATATCAGTGCGGACTTTGCCGTCGATCTTAATGAACCTTTGCATGCAGATCTTCTTGACCTCATCTCCGGTCAGGGCGTACTTCAGACGGTTCCTGAGGAAGATTATGAGAGGCAGGCACTCCCTCAGCTTGTGGGGACCAGTGGAGGGGCGAGGAGCCTACAGGGGGAGAATAGGGTTAGGCACTCTTAATTATATTAGAGCAGTTAAAAGGTGGATTCAACAATATGACGT
>TU877406
TGCTCCCTCTGTACATGTGGTCGCCTACACGCCAACTCCTCTGCTCACCTTGCCAATGATGAAGATGTTTCCCAGCCTGGTGGCGAAGATGTTTCCAGCGCTGTCTTTGACGTGAACCACGTCAAACGAGCCAGGGTGCCTTTCCCGGTTAGTGATGATACCAATCCGCCCCAAATTGGCACCGCCAGTCACCATGCACAGGTTACCTGTGTCGAACTTGATGTGTTCTGTGATCTTGCCGGTGGCGAGGTCGATGCGGACTGTGTCGTTGACCTTGATGAGGGGGTCTGGGTAGCGGATGGTGCGGGCGTCATGGGTCACCAGTGCGGGGACTCCCTTGGTACCCATCAGGTTCTTCTTCACCTTACACAGCTTGTactggagagggggaaagatGGGCGAGAAGAAAGTGAGTGATTGTTATGGTAAGGCT
>TU877413
ATGGTTTTTGTTGTAAATAACATGTTTTTATTTCAAAGCCAGGATGCCTAGACCTACATATAGGACTTAGCTGCTGCCGGCCTTGGCAGCGATTCTCTTGTCCCGCTCCTCAGCGATTGTGAGGCGAATACCCTTTCCACGAGGCAGGGACACCCACGGCTTGTTGCCTTGCCAATGATGAAGATGTTTCCCAGCCTGGTGGCGAAGATGTTTCCAGCGCTGTCTTTGACGTGAACCACGTCAAACGAGCCAGGGTGCCTTTCCCGGTTAGTGATGATACCAATCCGCCCCAAATTGGCACCGCCAGTCACCATGCACAGGTTACCTACGAGAAGGAGGgacgagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggaggagaggagagaagagagggaggagaaaag
>TU877415
ATGGTTTTTGTTGTAAATAACATGTTTTTATTTCAAAGCCAGGATGCCTAGACCTACATATAGGACTTAGCTGCTGCCGGCCTTGGCAGCGATTCTCTTGTCCCGCTCCTCAGCGATTGTGAGGCGAATACCCTTTCCACGAGGCAGGGACACCCACGGCTTGTTGCCTTGCCAATGATGAAGATGTTTCCCAGCCTGGTGGCGAAGATGTTTCCAGCGCTGTCTTTGACGTGAACCACGTCAAACGAGCCAGGGTGCCTTTCCCGGTTAGTGATGATACCAATCCGCCCCAAATTGGCACCGCCAGTCACCATGCACAGGTTACCTACGAGAAGGAGGgacgagaagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggaggagaggagagaagagagggaggagaaaag
>TU877416
ATGGTTTTTGTTGTAAATAACATGTTTTTATTTCAAAGCCAGGATGCCTAGACCTACATATAGGACTTAGCTGCTGCCGGCCTTGGCAGCGATTCTCTTGTCCCGCTCCTCAGCGATTGTGAGGCGAATACCCTTTCCACGAGGCAGGGACACCCACGGCTTGTTGCCCTGCCAATGATGAAGATGTTTCCCAGCCTGGTGGCGAAGATGTTTCCAGCGCTGTCTTTGACGTGAACCACGTCAAACGAGCCAGGGTGCCTTTCCCGGTTAGTGATGATACCAATCCGCCCCAAATTGGCACCGCCAGTCACCATGCACAGGTTACCTACGAGAAGGAGGgacgagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggaggagaggagagaagagagggaggagaaaag
>TU877419
ATGGTTTTTGTTGTAAATAACATGTTTTTATTTCAAAGCCAGGATGCCTAGACCTACATATAGGACTTAGCTGCTGCCGGCCTTGGCAGCGATTCTCTTGTCCCGCTCCTCAGCGATTGTGAGGCGAATACCCTTTCCACGAGGCAGGGACACCCACGGCTTGTCCTTGCCAATGATGAAGATGTTTCCCAGCCTGGTGGCGAAGATGTTTCCAGCGCTGTCTTTGACGTGAACCACGTCAAACGAGCCAGGGTGCCTTTCCCGGTTAGTGATGATACCAATCCGCCCCAAATTGGCACCGCCAGTCACCATGCACAGGTTACCTACGAGAAGGAGGgacgagaagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggacgagagaggagaagagagggaggagaggagagaagagagggaggagaaaag

Function

NR:

description
40S ribosomal protein S4

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU877409 False 325 lncRNA 0.57 3 10367459 10369403
TU877412 False 692 lncRNA 0.47 2 10369126 10372215
TU877406 False 433 lncRNA 0.55 2 10373787 10375121
TU877413 False 469 lncRNA 0.53 3 10374709 10375854
TU877415 False 532 TUCP 0.54 2 10374709 10375854
TU877416 False 448 lncRNA 0.53 3 10374709 10375854
TU877419 True 498 TUCP 0.53 3 10374709 10375854

Neighbor

gene id symbol gene type direction distance location
LOC110531436 LOC106578050 coding downstream 93479 10262293 ~ 10273980 (-)
LOC118965991 NA coding downstream 99756 10265797 ~ 10267703 (-)
LOC110531433 LOC106578048 coding downstream 120194 10241225 ~ 10247265 (-)
LOC110531425 LOC106578047 coding downstream 154174 10140623 ~ 10213285 (-)
LOC118965990 NA coding downstream 229750 10135529 ~ 10137709 (-)
LOC118965993 NA coding upstream 285536 10661390 ~ 10664564 (-)
LOC110531427 LOC106577878 coding upstream 296134 10671988 ~ 10695563 (-)
LOC110531422 LOC106577877 coding upstream 415339 10791193 ~ 10885360 (-)
LOC110531444 LOC106577924 coding upstream 1119688 11495542 ~ 11535439 (-)
LOC110531450 med11 coding upstream 1282810 11658664 ~ 11660833 (-)
G770231 NA non-coding downstream 34047 10333045 ~ 10333412 (-)
G770228 NA non-coding downstream 38806 10328190 ~ 10328653 (-)
G770211 NA non-coding downstream 69110 10296864 ~ 10298349 (-)
G770200 NA non-coding downstream 71088 10282427 ~ 10296371 (-)
G770191 NA non-coding downstream 106496 10260507 ~ 10260963 (-)
G770289 NA non-coding upstream 72922 10448776 ~ 10450607 (-)
G770305 NA non-coding upstream 148465 10524319 ~ 10525681 (-)
G770306 NA non-coding upstream 149925 10525779 ~ 10526854 (-)
G770307 NA non-coding upstream 151325 10527179 ~ 10527840 (-)
G770304 NA non-coding upstream 154024 10529878 ~ 10531905 (-)
G768780 NA other downstream 1376753 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 2084135 8277882 ~ 8283359 (-)
LOC118936684 LOC106578100 other downstream 2114704 8221531 ~ 8253809 (-)
G768390 NA other downstream 2175561 8189443 ~ 8191898 (-)
LOC110510419 LOC106560462 other downstream 2253389 8112588 ~ 8155916 (-)
G770549 NA other upstream 596519 10972373 ~ 10974413 (-)
G770627 LOC106577876 other upstream 731974 11107828 ~ 11108159 (-)
G771457 NA other upstream 1252762 11628616 ~ 11629588 (-)
LOC110531452 LOC106577886 other upstream 1322545 11698392 ~ 11701613 (-)
LOC110532912 LOC106577883 other upstream 1383384 11759145 ~ 11788765 (-)

Expression


Co-expression Network