Gene
RNA
| Item | Value |
|---|---|
| gene id | G770627 |
| gene name | LOC106577876 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 11107828 ~ 11108159 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: collagen alpha-6(IV) chain-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU877895 | True | 332 | TUCP | 0.63 | 1 | 11107828 | 11108159 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110531422 | LOC106577877 | coding | downstream | 222468 | 10791193 ~ 10885360 (-) |
| LOC110531427 | LOC106577878 | coding | downstream | 412265 | 10671988 ~ 10695563 (-) |
| LOC118965993 | NA | coding | downstream | 443264 | 10661390 ~ 10664564 (-) |
| LOC110531436 | LOC106578050 | coding | downstream | 833848 | 10262293 ~ 10273980 (-) |
| LOC110531444 | LOC106577924 | coding | upstream | 387383 | 11495542 ~ 11535439 (-) |
| LOC110531450 | med11 | coding | upstream | 550505 | 11658664 ~ 11660833 (-) |
| LOC110531452 | LOC106577886 | coding | upstream | 590233 | 11698392 ~ 11701613 (-) |
| LOC110531453 | LOC106577884 | coding | upstream | 633752 | 11741911 ~ 11750227 (-) |
| LOC110532912 | LOC106577883 | coding | upstream | 650986 | 11759145 ~ 11788765 (-) |
| G770624 | NA | non-coding | downstream | 2582 | 11104978 ~ 11105246 (-) |
| G770623 | NA | non-coding | downstream | 4591 | 11102955 ~ 11103237 (-) |
| G770621 | NA | non-coding | downstream | 6648 | 11100756 ~ 11101180 (-) |
| G770619 | NA | non-coding | downstream | 11585 | 11095939 ~ 11096243 (-) |
| G770616 | NA | non-coding | downstream | 17048 | 11090320 ~ 11090780 (-) |
| G770629 | LOC106577876 | non-coding | upstream | 345 | 11108504 ~ 11109924 (-) |
| G770590 | LOC106591785 | non-coding | upstream | 14553 | 11122712 ~ 11132322 (-) |
| G770645 | NA | non-coding | upstream | 37350 | 11145509 ~ 11149918 (-) |
| G770686 | NA | non-coding | upstream | 122332 | 11230491 ~ 11230763 (-) |
| G770689 | NA | non-coding | upstream | 125342 | 11233501 ~ 11233712 (-) |
| G770549 | NA | other | downstream | 133415 | 10972373 ~ 10974413 (-) |
| G770225 | NA | other | downstream | 731974 | 10367459 ~ 10375854 (-) |
| G768780 | NA | other | downstream | 2117122 | 8982468 ~ 8990706 (-) |
| LOC110531377 | LOC106578102 | other | downstream | 2824504 | 8277882 ~ 8283359 (-) |
| LOC118936684 | LOC106578100 | other | downstream | 2855073 | 8221531 ~ 8253809 (-) |
| G771457 | NA | other | upstream | 520457 | 11628616 ~ 11629588 (-) |
| G771540 | LOC106577916 | other | upstream | 763329 | 11870589 ~ 11916867 (-) |
| G771614 | NA | other | upstream | 862745 | 11970904 ~ 11971354 (-) |
