G770629 (LOC106577876)


Basic Information

Item Value
gene id G770629
gene name LOC106577876
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11108504 ~ 11109924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU877899
GATCTCACAGTGGGCGGAAACAGAAATTGTGGAGTGAGATGAACTAACCATAATAATCATGTGCGTTTGTTGTTGCTGATTTGTGTGCCAGCAGTGAATCGAGGAGCTGATAGGTTTGTTTCTGTGGTGGTGAACCTAAATCTTCACCGTCCGTCACTATAGCTAAACTGAAAAGGCACACGTTTGATTGACAAGTCAAACGTTGCGGACTGACTGTTACAGACGGACTGACATTTATATCTTACCCATTATTGGAATTCACATCAGTGCAATACATTCACATACATGGTCTCTTATGACCAATTGTTTTTGTTCTAATACTGTGATTCGTCATTGGATGATGTTGTCTCACTTATCTATGCCAATCATTCTAGTATTTTAAAAGTGCCTTTTTCCAAACTGTTGTCAAGTTGAGTCCCGGAGTAGGGTAACATAAAAAAAGAAGACATATTGGTAATAACAGAGTCTTACTGTATCTCAGACATCAAAGAtatcattggtgtgtgtgtgtgttaaagtggTTGGCTAGCAGTAAATAGGTATGTACAGTATAGCAGGTCTCTCAGGTTTATGACTGTAGTTGTTATGGTAGAgatctgtcccaaatggaaccctgtattgttcactacttgtgaccagaggcctatggagCCCAAgccataagtagtgcactatatagggaatagggcggcAGTGTGGTCCGAAGGGTTGGTTTGCAGTTGCACTAGGTAGCCGTGAATGTTTTCAGACCACGTAGCCATAGAAACGATAAAACACCCACATAAAGACACATATTAGCAACACTGTCAGTGATATCCTAGTGCAAAGCAATCAAACCCAAGACCccacatctctccatccctccctctctctctctcgCATCATAAACCCACAGAAGTGCCCTCGTCAGCCCTTCAGGACACCTTTACACCCCAAGTGAGATCCTGGGATGAAGCAGGGGACGGTGCTTAAATTCAGTCAGTCATCTGGTCAATAATTTTTTTTAAGggggaatgtttttttattttttacttcctctctctttttctttctgagAAGTAATCATCACCCTCTCTTTTGTTGTTTcagtctctgtgttttccatttcttctctctatctctctatcatcgACTCTTCTCCCGGCTACAAGATcttactgcagacctgacagcgACTGACTCTGCTGAGTTGGTTGCCTCCCTTCAGTGTGTCCATCGGAGGGGGGTTGAACTCGCGGTTAGGCTCCACCGTGGTCAGCCAGAAGCTGTACTTGTTGGCAAAGAAGTGGCAGGTGCCCTTAGCCCCGTTACACTCGATGAAGGGAGTTGCACGGAAGTCTTCCAGACAGGAGCCGGGTGAAACAAGGGACTGGCCTCCGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU877899 True 1381 lncRNA 0.45 2 11108504 11109924

Neighbor

gene id symbol gene type direction distance location
LOC110531422 LOC106577877 coding downstream 223144 10791193 ~ 10885360 (-)
LOC110531427 LOC106577878 coding downstream 412941 10671988 ~ 10695563 (-)
LOC118965993 NA coding downstream 443940 10661390 ~ 10664564 (-)
LOC110531436 LOC106578050 coding downstream 834524 10262293 ~ 10273980 (-)
LOC110531444 LOC106577924 coding upstream 385618 11495542 ~ 11535439 (-)
LOC110531450 med11 coding upstream 548740 11658664 ~ 11660833 (-)
LOC110531452 LOC106577886 coding upstream 588468 11698392 ~ 11701613 (-)
LOC110531453 LOC106577884 coding upstream 631987 11741911 ~ 11750227 (-)
LOC110532912 LOC106577883 coding upstream 649221 11759145 ~ 11788765 (-)
G770624 NA non-coding downstream 3258 11104978 ~ 11105246 (-)
G770623 NA non-coding downstream 5267 11102955 ~ 11103237 (-)
G770621 NA non-coding downstream 7324 11100756 ~ 11101180 (-)
G770619 NA non-coding downstream 12261 11095939 ~ 11096243 (-)
G770616 NA non-coding downstream 17724 11090320 ~ 11090780 (-)
G770590 LOC106591785 non-coding upstream 12788 11122712 ~ 11132322 (-)
G770645 NA non-coding upstream 35585 11145509 ~ 11149918 (-)
G770686 NA non-coding upstream 120567 11230491 ~ 11230763 (-)
G770689 NA non-coding upstream 123577 11233501 ~ 11233712 (-)
G770779 NA non-coding upstream 128323 11238247 ~ 11238659 (-)
G770627 LOC106577876 other downstream 345 11107828 ~ 11108159 (-)
G770549 NA other downstream 134091 10972373 ~ 10974413 (-)
G770225 NA other downstream 732650 10367459 ~ 10375854 (-)
G768780 NA other downstream 2117798 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 2825180 8277882 ~ 8283359 (-)
G771457 NA other upstream 518692 11628616 ~ 11629588 (-)
G771540 LOC106577916 other upstream 761564 11870589 ~ 11916867 (-)
G771614 NA other upstream 860980 11970904 ~ 11971354 (-)

Expression


Co-expression Network