G770590 (LOC106591785)


Basic Information

Item Value
gene id G770590
gene name LOC106591785
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11122712 ~ 11132322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU877850
ATTTATTCATTTGTCTTTTCTGCCAAAGGCAACAGTCAAGGTGCTACTTTACAGTTCATATTGTACTTGACTTGGTGATGGAAGAGGGTCCTAGATCAGTCTGTGCTCTTGTCAACTTCCTACACTAGCCTGACCCCAGAACAGTTTGTGCTATCATTATCAGGCCATGACATGACAGTTCCATTGAGGAGTTGGTAAGAGATCAGAAACAGACTGACACCCAGGATAACTCTacactagcctgatcccagaacaGTTTGTTGGTAAGAGATCAGAAACAGACTGACACCCAGGATAACTCTacactagcctgatcccagaacaGTTTGTGCCATCATTATCAGGCCATGAAATGACAGTTCCATTAATGAGTTGGTAAGAGATCAGAAACAGACTGACACCCAGGATAACTCTACACTAGGCTGATCCTAGAACAGTTTGTGCTCTCATTATGAAGACGTTACATCACAGTACCATTAATGAGTTGGTAAGAGATCAAAACAGACTGACACCCAGGATAACTCTacactagcctgatcccagaacaGTTTGTTGGTAAGAGATCAGAAACAGACCGACACCCAGGATAACTCTacacACTGTTAGATGTTTGTTCATTGTAAGATTCCACACAACAGTTATAGCCTGATTAGCATTATTAGGGAAATGTGCAACtagtgtgagagaaacagacttCAGTTAAACTGGTAAGAATGGAAATAAAACTAGAATATTGACTTTGCAAGAGGATTTGACCCTGTAGGGTAAATGAATTAACAAATGGGCCCttttcaaaacaacaaacggaaggAGAAGAAACAAAATACAAGTAAATAATTACACACAAAAACCCCTATAGCAATATACAGCTTGTTACTCCACACAACACAGAACAATACATGTTGTGACGTTAGGAAAAAGGTCCATTATACAACAGTTTCTTCCTATAGAGCTGAATACGGTCAAAACTAAATCACACATGAAAAGTTATGATATAACTGCATGTAAGAaatgtacagtatcagtcaaaaggttggacacacctactcattccaggtttgttttttaaaaaaaaacgattttctacattgtagaataatagtgaagacatcaaactatgaaagaacacatatggaatcatgtagtaaccaaaaaagttgttaaaacaaatcaaaatatattttatatttgagattctccaagtagccaccctttgccttgacagctttgcacagtcttgaataaaaaaatatatcaacTCTTGAATGGgttaggtgtttccaaacttttgactggtactgaatatttTATTTTTCTGATAGTTCTGCTGTAAAAGCTCAGTATTCCAGAAAGAAGATGGTCACGTCGCTGGTCGATATTTGGTCAATTTAGTCATACAAATTAATGACACATGAAATGATGTGCATTCTCATGCATAACTGGCCACAGTGAGAAAATGTTCATATACCACACATAGGTAAGGAAATGAAGAATGCAGATGCCATGACTGAGTCCCCATTCGCCGCCCTTCTCCCgaagtgtgcacttgcacacttTCTCGTAACGATTTCACAAAGGTTGAATCCAGCCAACGCTTACACCACTACTATGCTTTTAAAGCCATAAAAAGGGgagtgtgcaagtgcacacttcTGGACAAGGGTGGATAACCAGAATGTGTCCCAAGCCAACTTTCACCCTCTGTCCATCCACCCCTCCCTCAGTGTACCAGCTCCAGCTGGCTGGCGGAGAAGGGCAGCACCCCGCTGACGTAGTAAGCGATGCCCAGAGAGAGCAAGGCGATGACCACCAGCAGTAGCAGCACCCTCCAGAAGCCCAGGTCCTCAACAAACTCCTGCCAGGTGGTCCTGAAGCTGAACAGGACTCCCTCCCTGTTCTGGAGGTCGGGGTTCAGCAGGGAGTGGCTCTCCATTGCACTcgctCTCAGCCATTTGCATGGTCTCCAGTTTGGAGTGGGCTCCCCTGTTGAATCCTTTCAGCTCCTGTTCCTCTAGGCCCTCCAGGAGGCGGATAGCGTCCTTGTTCACCCCGCGCCTCTTGGCCAGCACCAGAGGAGTGGACCCGTTGTGGTTACTGGGAGAGAGAAACACCCAATGTAGCATGATAATGTTCAAACAAGGGTCCAACCAATGTTTGAGAAACACATTGACTCTATGGGGAGTGGACT
>TU877851
ATTTATTCATTTGTCTTTTCTGCCAAAGGCAACAGTCAAGGTGCTACTTTACAGTTCATATTGTACTTGACTTGGTGATGGAAGAGGGTCCTAGATCAGTCTGTGCTCTTGTCAACTTCCTACACTAGCCTGACCCCAGAACAGTTTGTGCTATCATTATCAGGCCATGACATGACAGTTCCATTGAGGAGTTGGTAAGAGATCAGAAACAGACTGACACCCAGGATAACTCTacactagcctgatcccagaacaGTTTGTTGGTAAGAGATCAGAAACAGACTGACACCCAGGATAACTCTacactagcctgatcccagaacaGTTTGTGCCATCATTATCAGGCCATGAAATGACAGTTCCATTAATGAGTTGGTAAGAGATCAGAAACAGACTGACACCCAGGATAACTCTACACTAGcctgatcccagaaGTTTGTTGGTAAGAGATCAGAAACAGACCGACACCCAGGATAACTCTacactagcctgatcccagaaGTTTGTTGGTAAGAGATCAGAAACAGACCGACACCCAGGATAACTCTacacACTGTTAGATGTTTGTTCATTGTAAGATTCCACACAACAGTTATAGCCTGATTAGCATTATTAGGGAAATGTGCAACtagtgtgagagaaacagacttCAGTTAAACTGGTAAGAATGGAAATAAAACTAGAATATTGACTTTGCAAGAGGATTTGACCCTGTAGGGTAAATGAATTAACAAATGGGCCCttttcaaaacaacaaacggaaggAGAAGAAACAAAATACAAGTAAATAATTACACACAAAAACCCCTATAGCAATATACAGCTTGTTACTCCACACAACACAGAACAATACATGTTGTGACGTTAGGAAAAAGGTCCATTATACAACAGTTTCTTCCTATAGAGCTGAATACGGTCAAAACTAAATCACACATGAAAAGTTATGATATAACTGCATGTAAGAaatgtacagtatcagtcaaaaggttggacacacctactcattccaggtttgttttttaaaaaaaaacgattttctacattgtagaataatagtgaagacatcaaactatgaaagaacacatatggaatcatgtagtaaccaaaaaagttgttaaaacaaatcaaaatatattttatatttgagattctccaagtagccaccctttgccttgacagctttgcacagtcttgaataaaaaaatatatcaacTCTTGAATGGgttaggtgtttccaaacttttgactggtactgaatatttTATTTTTCTGATAGTTCTGCTGTAAAAGCTCAGTATTCCAGAAAGAAGATGGTCACGTCGCTGGTCGATATTTGGTCAATTTAGTCATACAAATTAATGACACATGAAATGATGTGCATTCTCATGCATAACTGGCCACAGTGAGAAAATGTTCATATACCACACATAGGTAAGGAAATGAAGAATGCAGATGCCATGACTGAGTCCCCATTCGCCGCCCTTCTCCCgaagtgtgcacttgcacacttTCTCGTAACGATTTCACAAAGGTTGAATCCAGCCAACGCTTACACCACTACTATGCTTTTAAAGCCATAAAAAGGGgagtgtgcaagtgcacacttcTGGACAAGGGTGGATAACCAGAATGTGTCCCAAGCCAACTTTCACCCTCTGTCCATCCACCCCTCCCTCAGTGTACCAGCTCCAGCTGGCTGGCGGAGAAGGGCAGCACCCCGCTGACGTAGTAAGCGATGCCCAGAGAGAGCAAGGCGATGACCACCAGCAGTAGCAGCACCCTCCAGAAGCCCAGGTCCTCAACAAACTCCTGCCAGGTGGTCCTGAAGCTGAACAGGACTCCCTCCCTGTTCTGGAGGTCGGGGTTCAGCAGGGAGTGGCTCTCCATTGCACTGACAGGAAGAGAAAGAAGTAGCCCAGTGTCAGCTTACATGCCATTACTTGATTATAAATAGGAGAGATAGACAGGAAAGACAGATAGGAGATATGAGAGATAAACAGGAAAGATAGACAGGAGAGATAGACAGgagagacagacatgagagatagacaggagagatagacagacaggagagatagacaggagagatagataggaaagacagacagaagagacagataggagagatagacaggagagacagataggagagacagatagacaggagagatagacaggagagacagatagatggtACACAAGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU877850 False 2188 lncRNA 0.43 4 11122712 11132322
TU877851 True 2204 lncRNA 0.42 7 11124326 11132322

Neighbor

gene id symbol gene type direction distance location
LOC110531422 LOC106577877 coding downstream 237352 10791193 ~ 10885360 (-)
LOC110531427 LOC106577878 coding downstream 427149 10671988 ~ 10695563 (-)
LOC118965993 NA coding downstream 458148 10661390 ~ 10664564 (-)
LOC110531436 LOC106578050 coding downstream 848732 10262293 ~ 10273980 (-)
LOC110531444 LOC106577924 coding upstream 363220 11495542 ~ 11535439 (-)
LOC110531450 med11 coding upstream 526342 11658664 ~ 11660833 (-)
LOC110531452 LOC106577886 coding upstream 566070 11698392 ~ 11701613 (-)
LOC110531453 LOC106577884 coding upstream 609589 11741911 ~ 11750227 (-)
LOC110532912 LOC106577883 coding upstream 626823 11759145 ~ 11788765 (-)
G770629 LOC106577876 non-coding downstream 12788 11108504 ~ 11109924 (-)
G770624 NA non-coding downstream 17466 11104978 ~ 11105246 (-)
G770623 NA non-coding downstream 19475 11102955 ~ 11103237 (-)
G770621 NA non-coding downstream 21532 11100756 ~ 11101180 (-)
G770619 NA non-coding downstream 26469 11095939 ~ 11096243 (-)
G770645 NA non-coding upstream 13187 11145509 ~ 11149918 (-)
G770686 NA non-coding upstream 98169 11230491 ~ 11230763 (-)
G770689 NA non-coding upstream 101179 11233501 ~ 11233712 (-)
G770779 NA non-coding upstream 105925 11238247 ~ 11238659 (-)
G770784 NA non-coding upstream 120436 11252758 ~ 11254076 (-)
G770627 LOC106577876 other downstream 14553 11107828 ~ 11108159 (-)
G770549 NA other downstream 148299 10972373 ~ 10974413 (-)
G770225 NA other downstream 746858 10367459 ~ 10375854 (-)
G768780 NA other downstream 2132006 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 2839388 8277882 ~ 8283359 (-)
G771457 NA other upstream 496294 11628616 ~ 11629588 (-)
G771540 LOC106577916 other upstream 739166 11870589 ~ 11916867 (-)
G771614 NA other upstream 838582 11970904 ~ 11971354 (-)

Expression


Co-expression Network