G770982 (hmgb3)


Basic Information

Item Value
gene id G770982
gene name hmgb3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11547848 ~ 11551525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU878293
AGAAATGTATGTTCTCTTTATTGCAGATCCACTTTTAGTTATAATAATATTCAGACAACTTGTTGAATAATGATGATATGTGTTTGGGGGGGGTTTCACGTGACAAGATGAGAAggttttggagagagagacttTCAAGCAGCAAAATGAAAATCATTAATACATAACACCACGTGTAAAAATGTCATACTTTAATAATAATTCCAAACATAGCTTTTTCTAAACATACAAAAAAGAAAAAATCTTAGATACAGATAAGTACAGGTTTATTTTCTTCAATAGTCGTGCTTTTTCACTCAGTGTCgttttttatttttcatcatGAGAGATCTTACAACAACGAACGGTTAAAATGCACTTAGCCAAAAAGGAAATTATAGTTTCCATTATATACTGTTGTTTGGATGTTTTCCATCCTCCTCGGTTTCAAAGGAGCGAATCTTAACTTTCACTTAAGTCAAATGTTCACtttgtctcccattgacatcaatgcatgactAAGTGAAAATGTGACTGTAGTGGAAGTTACTAAACGACCCTGAACCATAGTATTAAATGACTGTTGGCCAGCATACACTAGCTAACCAGCCACTACTGTTCGTTTACATGGGAGGCTGTTGAACTGGGAGTTAGTTTCACCATGGCAACACTTCCTGGTgcaacaaccaacacacagctacacaaacagccacctagATACAACAACACCACCCCTACTAGATATGTGCAATCAGAAATCACCTTACATCTGGAGGCCTCAGAAAAATAAtcattacaaatgtattaaaaaaaaaaaaaaacgtggaCTAAAGTCTAAGTCAACCATATACAGTAAAACAACACCTTGCACATTCTTTTTAAAAACAAAGTCCCagatggcgccctattccctatatagtgcactacttttaaccagagctccATGGGATTCCTTataggccctagtcaaaagtagtgcactatataaggaatagggtgtaatttgggacgaaTCCCAGAAACAAAAAGGTGTTTATATATACTGCAATGCTACCACTGGTTTTAAATGCTTCTCCGTTGAATCGATATAGAGCCTGTTAAAGAGACAATGCTACCACTGGTTTTAAATGCTTCTCCGTTGAATCGATATAGAGCCTGTTAAAGAGACAATGCTAGGCGGGTTTTGAGGAAGACACTGGACAGTGCTGGTGAGATGGACAcggtaacacaaacacacacacacacacacgagcacacacacacagacacacacacacagctgttgggggggggggggggtgtattaggGGTCTACTTCGAGTTCAATCACAGTTGCCATAGTAACGTACAGTCTCAACATCTTAACTTGACACAATGTACAAATAGAACTTTACAGAAGCAGGTAACACAAAATTAACATAATGACAACGTCAAAACAACAAAGAGGTGGAAGGAGGGAATTGAATGAAGGAGGGAAGGGCGCAGAGCAATGTCATTAAGGAACATAATAAGATATCACCTGTGTTTCTTCTTAACCCTACAAATCGCATTTCAAACTGGAAAGGAAAACGCACGACTTAATCATCATCATTATCGTCACCATCATAATAAAACACAAAACAGAACTCAGGCGATCTACtcgtcatcctcctcctcatcttcctcctcctcgtcttcctcaTCGTCGTCATCATCATCGTCGTCCATATTACTCTTCGTCATGGGCTTTGGGGCCATTGCCATGCTCGGAACTACCACTTTGCCCTTACCGGACTTATAGTCAGCACCTTCTGGTATTTGTCTTTGAGTTTGTTGGCCTTGATCAGGTAGGGCTGTTTGGTGGCATCAGTCAGGTTGTTCCATTGCTCCCCCAGTTTCTTGGCCACGTCCCCGATGCCCAGGCTGGGGTGCTGGGCCTTGATCTTGGGCCGGTGGTCCGCACAGAAGATGAAGAAACCAGAGGAGGGCCTCTTTGGTGCGTTGGGGTCCTTCTTCCTTCCCTTCTTGCCTCCAGGGGCGAAGTGCATCATCTCGTTGTCGTAACGCACCTTATCCTGCTTCGCCATGTCGTCAAACTTCCCCTTCTCCTTACCAGACATCgCTTCCATCTTCCGGAGCACTTCTTGGAGAACTCAGCGAAGTTGACAGGTATCTCAGGGGTCTTCTTCTTGTGCTCCTCACGGCAGGTCTGAACGAAGTAGGCGTAGGAGGACATCTTGCCTTTGGGCTTCCCTGGAGTGCCTTTAGCCATCCTGGTCACTGGGCGGGGCCTAGCTGTGGTCTGGAACTCGTTGATTGGTTAATTGGTTGATTGGGTCAGTATCTAGTGAGAGTGGAGAGAAGATGAAAATGGGTTAATTCAATGTTGTGGTTTGATTTTCTTCTGGGAAAGTGAAC
>TU878292
AGAAATGTATGTTCTCTTTATTGCAGATCCACTTTTAGTTATAATAATATTCAGACAACTTGTTGAATAATGATGATATGTGTTTGGGGGGGGTTTCACGTGACAAGATGAGAAggttttggagagagagacttTCAAGCAGCAAAATGAAAATCATTAATACATAACACCACGTGTAAAAATGTCATACTTTAATAATAATTCCAAACATAGCTTTTTCTAAACATACAAAAAAGAAAAAATCTTAGATACAGATAAGTACAGGTTTATTTTCTTCAATAGTCGTGCTTTTTCACTCAGTGTCgttttttatttttcatcatGAGAGATCTTACAACAACGAACGGTTAAAATGCACTTAGCCAAAAAGGAAATTATAGTTTCCATTATATACTGTTGTTTGGATGTTTTCCATCCTCCTCGGTTTCAAAGGAGCGAATCTTAACTTTCACTTAAGTCAAATGTTCACtttgtctcccattgacatcaatgcatgactAAGTGAAAATGTGACTGTAGTGGAAGTTACTAAACGACCCTGAACCATAGTATTAAATGACTGTTGGCCAGCATACACTAGCTAACCAGCCACTACTGTTCGTTTACATGGGAGGCTGTTGAACTGGGAGTTAGTTTCACCATGGCAACACTTCCTGGTgcaacaaccaacacacagctacacaaacagccacctagATACAACAACACCACCCCTACTAGATATGTGCAATCAGAAATCACCTTACATCTGGAGGCCTCAGAAAAATAAtcattacaaatgtattaaaaaaaaaaaaaaacgtggaCTAAAGTCTAAGTCAACCATATACAGTAAAACAACACCTTGCACATTCTTTTTAAAAACAAAGTCCCagatggcgccctattccctatatagtgcactacttttaaccagagctccATGGGATTCCTTataggccctagtcaaaagtagtgcactatataaggaatagggtgtaatttgggacgaaTCCCAGAAACAAAAAGGTGTTTATATATACTGCAATGCTACCACTGGTTTTAAATGCTTCTCCGTTGAATCGATATAGAGCCTGTTAAAGAGACAATGCTACCACTGGTTTTAAATGCTTCTCCGTTGAATCGATATAGAGCCTGTTAAAGAGACAATGCTAGGCGGGTTTTGAGGAAGACACTGGACAGTGCTGGTGAGATGGACAcggtaacacaaacacacacacacacacacgagcacacacacacagacacacacacacagctgttgggggggggggggggtgtattaggGGTCTACTTCGAGTTCAATCACAGTTGCCATAGTAACGTACAGTCTCAACATCTTAACTTGACACAATGTACAAATAGAACTTTACAGAAGCAGGTAACACAAAATTAACATAATGACAACGTCAAAACAACAAAGAGGTGGAAGGAGGGAATTGAATGAAGGAGGGAAGGGCGCAGAGCAATGTCATTAAGGAACATAATAAGATATCACCTGTGTTTCTTCTTAACCCTACAAATCGCATTTCAAACTGGAAAGGAAAACGCACGACTTAATCATCATCATTATCGTCACCATCATAATAAAACACAAAACAGAACTCAGGCGATCTACtcgtcatcctcctcctcatcttcctcctcctcgtcttcctcaTCGTCGTCATCATCATCGTCGTCCATATTACTCTTCGTCATGGGCTTTGGGGCCATTGCCATGCTCGGAACTACCACTTTGCCCTTACCGGACTTATAGTCAGCAACGtcCTTCTGGTATTTGTCTTTGAGTTTGTTGGCCTTGATCAGGTAGGGCTGTTTGGTGGCATCAGTCAGGTTGTTCCATTGCTCCCCCAGTTTCTTGGCCACGTCCCCGATGCCCAGGCTGGGGTGCTGGGCCTTGATCTTGGGCCGGTGGTCCGCACAGAAGATGAAGAAACCAGAGCTGGCCTCTTTGGTGCGTTGGGGTCCTTCTTCCTTCCCTTCTTGCCTCCAGGGGCGAAGTGCATCATCTCGTTGTCGTAACGCACCTTATCCTGCTTCGCCATGTCGTCAAACTTCCCCTTCTCCTTACCAGACATCgtctgggggaaaaaaatcacaacatttaCACCACTTAAAACATTCCCAGCAATAGACTTTGAAAGGATGGACACATGGGCATTGTTCA
>TU878294
AGAAATGTATGTTCTCTTTATTGCAGATCCACTTTTAGTTATAATAATATTCAGACAACTTGTTGAATAATGATGATATGTGTTTGGGGGGGGTTTCACGTGACAAGATGAGAAggttttggagagagagacttTCAAGCAGCAAAATGAAAATCATTAATACATAACACCACGTGTAAAAATGTCATACTTTAATAATAATTCCAAACATAGCTTTTTCTAAACATACAAAAAAGAAAAAATCTTAGATACAGATAAGTACAGGTTTATTTTCTTCAATAGTCGTGCTTTTTCACTCAGTGTCgttttttatttttcatcatGAGAGATCTTACAACAACGAACGGTTAAAATGCACTTAGCCAAAAAGGAAATTATAGTTTCCATTATATACTGTTGTTTGGATGTTTTCCATCCTCCTCGGTTTCAAAGGAGCGAATCTTAACTTTCACTTAAGTCAAATGTTCACtttgtctcccattgacatcaatgcatgactAAGTGAAAATGTGACTGTAGTGGAAGTTACTAAACGACCCTGAACCATAGTATTAAATGACTGTTGGCCAGCATACACTAGCTAACCAGCCACTACTGTTCGTTTACATGGGAGGCTGTTGAACTGGGAGTTAGTTTCACCATGGCAACACTTCCTGGTgcaacaaccaacacacagctacacaaacagccacctagATACAACAACACCACCCCTACTAGATATGTGCAATCAGAAATCACCTTACATCTGGAGGCCTCAGAAAAATAAtcattacaaatgtattaaaaaaaaaaaaaaacgtggaCTAAAGTCTAAGTCAACCATATACAGTAAAACAACACCTTGCACATTCTTTTTAAAAACAAAGTCCCagatggcgccctattccctatatagtgcactacttttaaccagagctccATGGGATTCCTTataggccctagtcaaaagtagtgcactatataaggaatagggtgtaatttgggacgaaTCCCAGAAACAAAAAGGTGTTTATATATACTGCAATGCTACCACTGGTTTTAAATGCTTCTCCGTTGAATCGATATAGAGCCTGTTAAAGAGACAATGCTACCACTGGTTTTAAATGCTTCTCCGTTGAATCGATATAGAGCCTGTTAAAGAGACAATGCTAGGCGGGTTTTGAGGAAGACACTGGACAGTGCTGGTGAGATGGACAcggtaacacaaacacacacacacacacacgagcacacacacacagacacacacacacagctgttgggggggggggggggtgtattaggGGTCTACTTCGAGTTCAATCACAGTTGCCATAGTAACGTACAGTCTCAACATCTTAACTTGACACAATGTACAAATAGAACTTTACAGAAGCAGGTAACACAAAATTAACATAATGACAACGTCAAAACAACAAAGAGGTGGAAGGAGGGAATTGAATGAAGGAGGGAAGGGCGCAGAGCAATGTCATTAAGGAACATAATAAGATATCACCTGTGTTTCTTCTTAACCCTACAAATCGCATTTCAAACTGGAAAGGAAAACGCACGACTTAATCATCATCATTATCGTCACCATCATAATAAAACACAAAACAGAACTCAGGCGATCTACtcgtcatcctcctcctcatcttcctcctcctcgtcttcctcaTCGTCGTCATCATCATCGTCGTCCATATTACTCTTCGTCATGGGCTTTGGGGCCATTGCCATGCTCGGAACTACCACTTTGCCCTTACCGGACTTATAGTCAGCACCTTCTGGTATTTGTCTTTGAGTTTGTTGGCCTTGATCAGGTAGGGCTGTTTGGTGGCATCAGTCAGGTTGTTCCATTGCTCCCCCAGTTTCTTGGCCACGTCCCCGATGCCCAGGCTGGGGTGCTGGGCCTTGATCTTGGGCCGGTGGTCCGCACAGAAGATGAAGAAACCAGAGGAGGGCCTCTTTGGTGCGTTGGGGTCCTTCTTCCTTCCCTTCTTGCCTCCAGGGGCGAAGTGCATCATCTCGTTGTCGTAACGCACCTTATCCTGCTTCGCCATGTCGTCAAACTTCCCCTTCTCCTTACCAGACATCgtctgggggaaaaaaatcacaacatttaCACCACTTAAAACATTCCCAGCAATAGACTTTGAAAGGATGGACACATGGGCATTGTTCA

Function

symbol description
hmgb3 Enables RNA binding activity. Predicted to be involved in DNA geometric change; DNA recombination; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of B cell differentiation and negative regulation of myeloid cell differentiation. Predicted to be located in chromosome; cytoplasm; and nucleus. Implicated in syndromic microphthalmia 13.

NR:

description
high mobility group protein B3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU878293 False 2376 lncRNA 0.43 4 11547848 11551525
TU878292 False 2170 lncRNA 0.42 3 11548678 11551525
TU878294 True 2167 lncRNA 0.42 3 11548678 11551525

Neighbor

gene id symbol gene type direction distance location
LOC110531444 LOC106577924 coding downstream 12409 11495542 ~ 11535439 (-)
LOC110531422 LOC106577877 coding downstream 662488 10791193 ~ 10885360 (-)
LOC110531427 LOC106577878 coding downstream 852285 10671988 ~ 10695563 (-)
LOC118965993 NA coding downstream 883284 10661390 ~ 10664564 (-)
LOC110531436 LOC106578050 coding downstream 1273868 10262293 ~ 10273980 (-)
LOC110531450 med11 coding upstream 107139 11658664 ~ 11660833 (-)
LOC110531452 LOC106577886 coding upstream 146867 11698392 ~ 11701613 (-)
LOC110531453 LOC106577884 coding upstream 190386 11741911 ~ 11750227 (-)
LOC110532912 LOC106577883 coding upstream 207620 11759145 ~ 11788765 (-)
trnal-aag NA coding upstream 418644 11970169 ~ 11970250 (-)
G770998 NA non-coding downstream 35789 11506127 ~ 11512059 (-)
G770993 NA non-coding downstream 46571 11500981 ~ 11501277 (-)
G770841 NA non-coding downstream 190163 11357318 ~ 11357685 (-)
G770784 NA non-coding downstream 293772 11252758 ~ 11254076 (-)
G770779 NA non-coding downstream 309189 11238247 ~ 11238659 (-)
G770986 NA non-coding upstream 1177 11552702 ~ 11552914 (-)
G771017 NA non-coding upstream 1576 11553101 ~ 11553442 (-)
G771019 NA non-coding upstream 2907 11554432 ~ 11554803 (-)
G771417 NA non-coding upstream 8637 11560162 ~ 11560391 (-)
G771418 NA non-coding upstream 10271 11561796 ~ 11562139 (-)
G770627 LOC106577876 other downstream 439689 11107828 ~ 11108159 (-)
G770549 NA other downstream 573435 10972373 ~ 10974413 (-)
G770225 NA other downstream 1171994 10367459 ~ 10375854 (-)
G768780 NA other downstream 2557142 8982468 ~ 8990706 (-)
LOC110531377 LOC106578102 other downstream 3264524 8277882 ~ 8283359 (-)
G771457 NA other upstream 77091 11628616 ~ 11629588 (-)
G771540 LOC106577916 other upstream 319963 11870589 ~ 11916867 (-)
G771614 NA other upstream 419379 11970904 ~ 11971354 (-)

Expression


Co-expression Network