G771656 (LOC106577894)


Basic Information

Item Value
gene id G771656
gene name LOC106577894
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12048612 ~ 12057878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU879152
ctcatatttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccgctgtatatttatatatatatgacattattattatatatgtACCGAACACGGGATGGAAGGTGCCCAGTTTCAGTTTGGTAGTGGTATGGTTGTGACTGCTGATCATCTCCCAGTTGATCTGAGATACAGTGTCGTTCTCCGACAGGAGACGACAGGTAATAGACAGATGCTCTCTGTCCTGTGTGTGAGACACAGAGATCACACTGCCGGCTATGCCTGTATGTATCAGCACGAGGGCCAGAAGACAGTAGAcccagtgttttctcatctcttgCTCTGTTGTCAGCCCCACCGATGTTGATCCACTTCTCTGATCCACTTCTCTGATCCTCGTCCCTGATCCTCGTCTCTGAtcctcttctctgatcctctTCTCTGATCCTCGTCTCTGATCCTCGTCTCTGATCCTCTTCTCTGATCCTCTTCTCTGATCCTCGTCTCTGATCCTCGTCTCTGATCCTCGTCTCTGATCCTCTTATCTGATCCTCTTCTCttgttgtctttttgttgttTTCCAGTCTCCTCTTTCACCacatatttaatttaatttatacaTTCTGTTTCACTGTGTTTAATCTCTGTCTTCACACCACCTGTCTGTCTTCAcaccacctgtctgtctctgaatcTTTCTGATTCTCTGTCTCTGATTCACAACTCTCAACTTCCTCCTTCCGTACACGTTCAGCCTAACAACTTTTCATCTCtc
>TU879150
CTTTCCCTCCGTGTACGTCTCTGTGCACCTAGGTGCTGCTTTGTTCTGGACCAACTGCAATTGTACCTATGTCCCTTTGCCGCACAGCTGGGTAGTTGTTAAGGTGCGacgaaactagggcctgtaggaactGTTTGGTCGACTGAGATGTCAAGAAGGGAGAGCAACGCCGTATCATGGACAGACCGCTACAAACATGTGGTTCATTCTTGACTATCACTCCACCTGTCGGAGGTTTGAAACACTGAAAAACATCCAGTCAAACTGAACATCCTAGTCCAGACCCAGTCTGTCATACAGCTGTTTTATTCCATTCTTGTTCGTTTGGCTTTTTCAAGCACTTTAAGATACATTTTGTGACGAAAAGCACTGTAGAAGTTGAATAAATTCCTTTATTTTGAATTGACTGCTTTGAAAAGTGAGGTTTCCTCATACATAGATAAATATAAAACGTGTAGAAAGAAAGACATACCTTTTGTGGCCCTGGCTCTGCCACTTGCTGTCGCCCTTGTTGTGGCCCTTGTTGTGGCCCGTGCTGTGTTGTGGGGCCCCAGGTTGTGGCCGTCCCTTGGTAGGCCTTCCACAGCCGTCCATACAGCAGGTCCAGCTTGATCTTAGCATAGAGCTTGGAGGGGTCAAAAccctggggctgaggctgggggggTGAGGGAAGAGGGGGTTGCTGGGGGGGCTCCTCTGTGACCccTTCTGATTCTGTGTGTTGATCTGTCAGATACGCCTCTACCTCATACATTCGCCTCCTGGAACAAGAGACAAGAGCACATAAGTCTTGGTTTAGAGTCAGAGAACTGAAAACATTTGGTGTTAGAGTCAGAGAGCAGATACGTCTTGTTGTTAGAATCAGAGAGCTGATAAGTCTTGGTTTAGAGTCAGAGAACTGATACGTCTTCTTTTAGAGTCAGAGAGCTGAAAACCTTTGGTGTTAGAGTCAGAGAGCAGATAAGTCTTGTTGTTAGTCAGAGAGCAGATAAGTCTCGTTGTTAGTCAGAGAGCAGATAAGTCTTGTTGTTAGAGTCAGAGAGCAGATAAGTCTTGTTGTTAGTCAGAGAGCAGATAAGTCTCGTTGTTAGTCAGAGAGCAGATAAGTCTT

Function

NR:

description
uncharacterized protein LOC110531463

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU879152 False 771 lncRNA 0.44 4 12048612 12051262
TU879150 True 1111 lncRNA 0.46 2 12055969 12057878

Neighbor

gene id symbol gene type direction distance location
trnal-aag NA coding downstream 78362 11970169 ~ 11970250 (-)
LOC110532912 LOC106577883 coding downstream 259847 11759145 ~ 11788765 (-)
LOC110531453 LOC106577884 coding downstream 298385 11741911 ~ 11750227 (-)
LOC110531452 LOC106577886 coding downstream 346999 11698392 ~ 11701613 (-)
LOC110531450 med11 coding downstream 387779 11658664 ~ 11660833 (-)
LOC110531465 LOC107666294 coding upstream 68349 12092145 ~ 12144786 (-)
LOC110531459 LOC106577897 coding upstream 89616 12147494 ~ 12153015 (-)
trnas-uga-2 NA coding upstream 127754 12185486 ~ 12185735 (-)
trnaw-cca-4 NA coding upstream 140829 12198707 ~ 12198778 (-)
sox19b LOC106577904 coding upstream 378462 12436340 ~ 12441768 (-)
G771654 NA non-coding downstream 2468 12045587 ~ 12046144 (-)
G771649 NA non-coding downstream 9697 12037033 ~ 12038915 (-)
G771647 NA non-coding downstream 12662 12035542 ~ 12035950 (-)
G771646 NA non-coding downstream 13145 12035195 ~ 12035467 (-)
G771645 NA non-coding downstream 13514 12034856 ~ 12035098 (-)
G771664 NA non-coding upstream 12356 12070234 ~ 12070451 (-)
G771667 NA non-coding upstream 14278 12072156 ~ 12072444 (-)
G771668 NA non-coding upstream 15002 12072880 ~ 12073455 (-)
G771672 NA non-coding upstream 18215 12076093 ~ 12076394 (-)
G771675 NA non-coding upstream 22485 12080363 ~ 12080573 (-)
G771614 NA other downstream 77258 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 159897 11870589 ~ 11916867 (-)
G771457 NA other downstream 419024 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 936391 12994269 ~ 12996410 (-)
G773163 NA other upstream 1532375 13586326 ~ 13666937 (-)
G773168 NA other upstream 1639301 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1922450 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 2191523 14249401 ~ 14254157 (-)

Expression


Co-expression Network