G771735 (LOC106577899)


Basic Information

Item Value
gene id G771735
gene name LOC106577899
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12214023 ~ 12235651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU879241
tctgcaatagATCCACCTAGATCTTTATCTCCTGACTTCTGCAATAAATCCACCTAGATCTTTATCTCCTGACTTCTGCACTAAATCCAGGAACAACAGAGTTGAGCGATTCCATGAGATGGAATTAGATCAAAAACAAAGAGTCCCTTAGTTTTTCCTGACCACAGCATGAGGTGACTGGGAAAAACCCCAGGCCTTAGGTGGTCTGCTGCCAATAGGGCATTTTTTCACTCAGATCACAGGGTGAGGAAAAACTCAGGGGTCCTAAAGtgatgaaatgtgtgtgtgtgtgtgtcctctttcACCAAGGCCTCCACATAGAGGGGTCTCCCACAGGGCCGAAGAAAGGGGGCAGGGGGGCGGGGTGAGACACCCCTGGCTGGGGGAGGTTGGGTGAGCtagaaggggaggaggcaggcagcTGCTCCCTCCAATCTCTCCCAGAATGCACCTGCCTGTGGGGGGCATGGAGCGGGGAACATCTTGTGGGCGGGGTCAACGGCGGCGAGGCATGATGCATCTGTAAACGGCGAGGTCGGAATAGACCTACGCCTCCAGAAGGCAGTGAAAGCGGAGACTGGGGAGGGGATCCAGGTCCAGAATTGGGACtagcaccactactactactaccaccaccactaccaattCTACCGTTACAATTACCAATGGCCCTTATCAGAGTCCCATTGACCTCACCAGTGATAGGCCTTGTTGGGGTCCGATTAGGCCCATTGCCACCAGTGTTTCCAGGCCCAGTCTCTAAGCTGATGTGGGGCAGAGACTTAAGGAGGTGATTGAGGAGCTGGGCCCCTAGAGGCTTGTCCATGTCTGGACAGCCCAGGAGCAGGTTATGGACCTCCTGCATACACTGGATGTATCCACTGCTGTAGCGCTGCCGGGACTGGAACCCGACACGGGGACCAGCAGGGATGCCAGT

Function

NR:

description
transcription cofactor HES-6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU879241 True 937 lncRNA 0.54 2 12214023 12235651

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-4 NA coding downstream 15245 12198707 ~ 12198778 (-)
trnas-uga-2 NA coding downstream 28310 12185486 ~ 12185735 (-)
LOC110531459 LOC106577897 coding downstream 61008 12147494 ~ 12153015 (-)
LOC110531465 LOC107666294 coding downstream 69237 12092145 ~ 12144786 (-)
trnal-aag NA coding downstream 243773 11970169 ~ 11970250 (-)
sox19b LOC106577904 coding upstream 200689 12436340 ~ 12441768 (-)
LOC110531476 LOC106608954 coding upstream 233154 12468805 ~ 12479392 (-)
LOC118966197 NA coding upstream 235325 12470976 ~ 12471118 (-)
LOC118966200 NA coding upstream 238017 12473668 ~ 12473792 (-)
LOC118966199 NA coding upstream 239856 12475507 ~ 12475649 (-)
G771732 LOC105027204 non-coding downstream 16264 12195331 ~ 12197759 (-)
G771730 NA non-coding downstream 19320 12194494 ~ 12194703 (-)
G771728 LOC100380853 non-coding downstream 22029 12191638 ~ 12191994 (-)
G771727 NA non-coding downstream 25246 12188241 ~ 12188777 (-)
G771726 NA non-coding downstream 26114 12187671 ~ 12187909 (-)
G771751 NA non-coding upstream 259 12235910 ~ 12236188 (-)
G771752 NA non-coding upstream 735 12236386 ~ 12236628 (-)
G771753 NA non-coding upstream 1295 12236946 ~ 12237967 (-)
G771757 NA non-coding upstream 7951 12243602 ~ 12243819 (-)
G771759 NA non-coding upstream 10861 12246512 ~ 12246911 (-)
G771614 NA other downstream 242669 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 325308 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 425454 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 512440 11698392 ~ 11701613 (-)
G771457 NA other downstream 584435 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 758618 12994269 ~ 12996410 (-)
G773163 NA other upstream 1354602 13586326 ~ 13666937 (-)
G773168 NA other upstream 1461528 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1744677 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 2013750 14249401 ~ 14254157 (-)

Expression


Co-expression Network