G772857


Basic Information

Item Value
gene id G772857
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12939794 ~ 12942007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU880553
tctccccactgtatatgcacttGTTGTAGACATCTAATACTTCATGAACAAGAGTATCCTAGATTATACAACAGCTGGGTTTAATCCttgatgctgattggttaatCCACATTCTAGCCACATACTAGCCACAAGCTACCACAgtctaaatctatgatgttaaaatgcctatttactctttTCCATCTCACAGCACAATCCATCAGCCCAGTCAGAgaagttataaacttgatctccccTATGataagcatctagacattatctcccatttctgttagactaacatttagttttcaacagtgcagatttgtataaaccttgctttctgtctctccgacatatgtaaaattgtttaaatttTAAACttcaatctccagctgtcccatagtaatgaacgtgtcgggagttgggatgagacagacaggcaggcagcttttctcagcctgtcgatggcatcatttttatggatacagtgcattcggaaagtattcagaccccttgaccacattttgttacgttacagccttattctaaaatgtattaaattatttccccccctcatcaatccacatACACTACccagtaatgacaaagcaaaaacagttttttttttgccaaaaaaaatgaataaacggaaatatcacatttacataagtattcagaccctttactcagtactttgtttaagcatCGTTGGCAGTGAATGCAGCCTaaagtcttcttgtgtatgacgctacaagcttggtacacctgtatttggggagtttcttccattcttctctgcagatcctctcaagctctatcatgttggatggggagcatcgctgcacagctattttcagatctctccagagatgtttgatcgggttcaaatccgggctctggctgggccactcaaaaacattcagagacttgtcccgaagccactcctgcattgtcttggctgtgaaaggaatcttcgccccagtctgaggtcctgagaactctagagcaggtattcatcaaggatctctctgtacttttctccattcatctgtccctcgatcctgactagtctcccagttcctgccgctgaaaaacatcccccatttccacagaggaactctggagctatgtcagagtgaccattgggttcttagtcacctccctgtccaaggcccttctcccccgattgctcagtttagctgggtggccagctctaggaagagtcatggtggttccaatcttcttccatttaagaataatggaggcaactgtgttcttggggactttcaatgcaaAAGACAGGTCTTtgtacccagatctgtgccagaacacaatcctgtttcgggaGCTCTACAGATCAATTCCatcaacctcgtggcttggtttttgctctcacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgcacttcccacaggtggactccaatcaagttttataaacatctcatggatggtctttggaaacaggatgcacctgagctcaattttgagtcttatagcaaagggtctgaattcttatgttaacctttttgggatagggggcagcattttcacttttggatgaatagtgtgcccagagtgaactgcctcctactctgtcccagatgctaatatatgcatattattagtagtattggatagaaactctgaagtttctaaaactgtttgaatgatgtctgtgagtttaacagaactcatatggcaagcaaaaaccggagaaaaatccaaccaggaagtgggaaatctgaggtttgtagtttttcaactcagcccctattgaagatacaggtCTTtggattcaataaaaaaaattcctgatcaatctacacacaataccccataatgacgaagcaaaaacgtTTTTTCTGTTATtaggtatttcattttttttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU880553 True 1938 lncRNA 0.41 2 12939794 12942007

Neighbor

gene id symbol gene type direction distance location
LOC110531492 LOC106577986 coding downstream 63348 12856566 ~ 12876446 (-)
trnaa-ugc-29 NA coding downstream 286005 12653719 ~ 12653789 (-)
LOC110531484 LOC106577912 coding downstream 304566 12595885 ~ 12635228 (-)
LOC110531482 LOC106577910 coding downstream 356293 12566380 ~ 12583501 (-)
LOC110531481 LOC106577909 coding downstream 377180 12552125 ~ 12562614 (-)
ripk3 ripk4 coding upstream 24126 12966133 ~ 12983100 (-)
LOC110532921 LOC106577946 coding upstream 70705 13012712 ~ 13014459 (-)
LOC118966159 LOC106577936 coding upstream 177990 13119997 ~ 13139049 (-)
LOC110531504 tri39 coding upstream 269508 13211515 ~ 13217001 (-)
LOC110531502 LOC106577948 coding upstream 408113 13350120 ~ 13367176 (-)
G772803 NA non-coding downstream 94040 12845531 ~ 12845754 (-)
G772802 NA non-coding downstream 94400 12845096 ~ 12845394 (-)
G772798 NA non-coding downstream 98909 12840210 ~ 12840885 (-)
G772797 NA non-coding downstream 101139 12837266 ~ 12838655 (-)
G772753 NA non-coding downstream 175073 12758490 ~ 12764721 (-)
G772863 NA non-coding upstream 21416 12963423 ~ 13012014 (-)
G772914 NA non-coding upstream 137765 13079772 ~ 13084925 (-)
G772924 NA non-coding upstream 160022 13102029 ~ 13102298 (-)
G772934 NA non-coding upstream 169895 13111902 ~ 13112213 (-)
G771614 NA other downstream 968440 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 1051079 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 1151225 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 1238211 11698392 ~ 11701613 (-)
G771457 NA other downstream 1310206 11628616 ~ 11629588 (-)
G772877 LOC106577934 other upstream 52262 12994269 ~ 12996410 (-)
G773163 NA other upstream 648246 13586326 ~ 13666937 (-)
G773168 NA other upstream 755172 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 1038321 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 1307394 14249401 ~ 14254157 (-)

Expression


Co-expression Network