G772863


Basic Information

Item Value
gene id G772863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12963423 ~ 13012014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU880562
tcacttataattcactgtatcacaattccagtgggtcagaagtttacataaactaagttgactgcctttaaacagcttgaaaaattcccaaaattatgtcatggttttagaagcttctgataggctaattgacataatttgagtgaattagagttgtacctgtggatgtatttcaaggcctaccttcaaactcagtgtctctttacTTGAttgaaaagtatctatatccacagtaaaacgagccctatatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcatctgcacatggggacaaagatcatactttttggagatatatcctctggtctgttgaaacaaaaatagaactgtttggccataatgaccattgttatgtttggaggaaaaaggggaaggcttgcaagccaaagaacaccatcccaactgtgaagcacgggggtggcagcatcattttgtgggggtgctttgctgcaggagggcctggtgcacttcacaaaatggatggtatcatgaggtaggaaaattacgatgatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggttacaaatgagttttccaaatggacaatgaccccaagcatacatccaaagttgtgacaaaatggcttaaggacaacaagtcaaggtattggagtggccatcacaaagccctgacctctatgctatagaacatttgtgggcagaactgaaaaagcgtgtgcgagccaaggaggtctacaaacctgactcagttacagcagctctgtcaggaggaatgggccaaaattcacacaacttattgtgggaagcttgtggaaggctacccaaaacatttaatggcaatgctaccaaatactaattgagtgtatgtaaactgctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctgctattattctgacatttcacattcttaaaagaaagtggtcatcctaactgacctaagacagggaatttttactaggattacatttcaggaattgtgaaaaactgtgtttaaatgtatttggctgaggtgtatgtaaacttccgacttcaactgtatatcagtACATATTAAGCTTATAATCTTATATTAACACttctataaacacacacatcttTAAAGAATAAACCAACACCCCCTCCTATATATTCTTACATGCCTCCTCTCGGTATTCAAGCAGCGAGAGAAATTGGTTGTGACAGTGTACGGTATGAAACCcataggcaacacacacacacacacacacacacacctcgccaAAAATACCATCTGCCGCCGGATCCACCAGGGTGAACTGCAGGAGTCCTTACCCAGACTCCTCCACTCGAAGCGTTGAAGGTGTCCGCACTATTTAcagcacaaacacatgcacagctTTGGAGAAGGTGGAAGTAATCCCTTTCAATACTGATTCAGGGTTAGATTTGATGTAATCTCCCGAACAGTTGAGGTTATCATAGGGAGCAtagaatctgatcctagatctgtggtaagGTCAACTTCTATTATACAGTTACAGTGTCACCCTTATGATTACATTTGTGATCTGGGCCTGCATTCATAAAGTATATCAGAGTAGGGGGGTGGGGTGGTTCGATGCCAGCTGCCCATCATAGGGCTGGCTACCTGTCATCATCATCTTGCTCCAAGTAGCATTCCTCAGCGACTAGGCCATACCCCAAAACTATACAATAAAATGCCAGATTACATTCTGTCTCTGTTGTTCATTCAGTTAAGCCTGTCCTTGATTGATCTTTACCTACAAAGATTCCATTGTCTTTTATTACCTTTAGAACAATTATTATTTctatgtaattattattattatgtcattATTAGCATTTCATGCATCAAAGGAACTTGAATACGATCCACAATACATAACTACACAAGCATGACACCTACTGTATGATCTACAGTATCATTCATATGCTGGAGCAGTGTATAGAAAAAAGTCTTATGCAAAATGGTACCATTCAGGATTTTGTGATAAAAACTCCTCCTCCTTTGTGATACAAACTCCTCCTTTGTAATACAAAACTCCTCCCCCTTTGTGATACAAACTCCTCCTTTGTAATACAAACTCCTCCTCCTTTGTTATACAaactcctcctcagtctgtcttGTCCTCTATCTCTTTCAcaccctatcctctctctctctctctatatatgtctctcacgtcctctctatctatcccatCACTCACTTGCTTACCCATCTCTTATTCTCTCACTCCTATCTCCCCACATTCCTCCCcctcgtctctccctccccttcccccctcccttcttACAAAGGAAACACCAGAAACCCAGAGAAGGTGGAGTATTTCCATCCTCCCATCAGGTTCCCTCTCTCCAGTTTGAGATAAGCCTTATCTCCTCTCTCCATGGTGACCAAGCCAGCGTTGGTGGCTGCTTCCCTGGTCACGTCTTGGTCCCCGGCAAAGGCTGAGATGAACGGATGTCCATTTAAAACCAGACTCAC
>TU880563
tcacttataattcactgtatcacaattccagtgggtcagaagtttacataaactaagttgactgtgactttaaacagcttgaaaaattcccaaaattatgtcatggttttagaagcttctgataggctaattgacataatttgagtgaattagagttgtacctgtggatgtatttcaaggcctaccttcaaactcagtgtctctttacTTGAttgaaaagtatctatatccacagtaaaacgagccctatatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcatctgcacatggggacaaagatcatactttttggagatatatcctctggtctgttgaaacaaaaatagaactgtttggccataatgaccattgttatgtttggaggaaaaaggggaaggcttgcaagccaaagaacaccatcccaactgtgaagcacgggggtggcagcatcattttgtgggggtgctttgctgcaggagggcctggtgcacttcacaaaatggatggtatcatgaggtaggaaaattacgatgatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggttacaaatgagttttccaaatggacaatgaccccaagcatacatccaaagttgtgacaaaatggcttaaggacaacaagtcaaggtattggagtggccatcacaaagccctgacctctatgctatagaacatttgtgggcagaactgaaaaagcgtgtgcgagccaaggaggtctacaaacctgactcagttacagcagctctgtcaggaggaatgggccaaaattcacacaacttattgtgggaagcttgtggaaggctacccaaaacatttaatggcaatgctaccaaatactaattgagtgtatgtaaactgctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctgctattattctgacatttcacattcttaaaagaaagtggtcatcctaactgacctaagacagggaatttttactaggattacatttcaggaattgtgaaaaactgtgtttaaatgtatttggctgaggtgtatgtaaacttccgacttcaactgtatatcagtACATATTAAGCTTATAATCTTATATTAACACttctataaacacacacatcttTAAAGAATAAACCAACACCCCCTCCTATATATTCTTACATGCCTCCTCTCGGTATTCAAGCAGCGAGAGAAATTGGTTGTGACAGTGTACGGTATGAAACCcataggcaacacacacacacacacacacacacacctcgccaAAAATACCATCTGCCGCCGGATCCACCAGGGTGAACTGCAGGAGTCCTTACCCAGACTCCTCCACTCGAAGCGTTGAAGGTGTCCGCACTATTTAcagcacaaacacatgcacagctTTGGAGAAGGTGGAAGTAATCCCTTTCAATACTGATTCAGGGTTAGATTTGATGTAATCTCCCGAACAGTTGAGGTTATCATAGGGAGCAtagaatctgatcctagatctgtggtaagGTCAACTTCTATTATACAGTTACAGTGTCACCCTTATGATTACATTTGTGATCTGGGCCTGCATTCATAAAGTATATCAGAGTAGGGGGGTGGGGTGGTTCGATGCCAGCTGCCCATCATAGGGCTGGCTACCTGTCATCATCATCTTGCTCCAAGTAGCATTCCTCAGCGACTAGGCCATACCCCAAAACTATACAATAAAATGCCAGATTACATTCTGTCTCTGTTGTTCATTCAGTTAAGCCTGTCCTTGATTGATCTTTACCTACAAAGATTCCATTGTCTTTTATTACCTTTAGAACAATTATTATTTctatgtaattattattattatgtcattATTAGCATTTCATGCATCAAAGGAACTTGAATACGATCCACAATACATAACTACACAAGCATGACACCTACTGTATGATCTACAGTATCATTCATATGCTGGAGCAGTGTATAGAAAAAAGTCTTATGCAAAATGGTACCATTCAGGATTTTGTGATAAAAACTCCTCCTCCTTTGTGATACAAACTCCTCCTTTGTAATACAAAACTCCTCCCCCTTTGTGATACAAACTCCTCCTTTGTAATACAAACTCCTCCTCCTTTGTTATACAaactcctcctcagtctgtcttGTCCTCTATCTCTTTCAcaccctatcctctctctctctctctatatatgtctctcacgtcctctctatctatcccatCACTCACTTGCTTACCCATCTCTTATTCTCTCACTCCTATCTCCCCACATTCCTCCCcctcgtctctccctccccttcccccctcccttcttACAAAGGAAACACCAGAAACCCAGAGAAGGTGGAGTATTTCCATCCTCCCATCAGGTTCCCTCTCTCCAGTTTGAGATAAGCCTTATCTCCTCTCTCCATGGTGACCAAGCCAGCGTTGGTGGCTGCTTCCCTGGTCACGTCTTGGTCCCCGGCAAAGGCTGAGATGAACGGATGTCCATTTAAAACCAGACTCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU880562 False 2592 lncRNA 0.42 2 12963423 13012014
TU880563 True 2594 lncRNA 0.42 2 12963423 13012014

Neighbor

gene id symbol gene type direction distance location
LOC110531492 LOC106577986 coding downstream 86977 12856566 ~ 12876446 (-)
trnaa-ugc-29 NA coding downstream 309634 12653719 ~ 12653789 (-)
LOC110531484 LOC106577912 coding downstream 328195 12595885 ~ 12635228 (-)
LOC110531482 LOC106577910 coding downstream 379922 12566380 ~ 12583501 (-)
LOC110531481 LOC106577909 coding downstream 400809 12552125 ~ 12562614 (-)
LOC110532921 LOC106577946 coding upstream 698 13012712 ~ 13014459 (-)
LOC118966159 LOC106577936 coding upstream 107983 13119997 ~ 13139049 (-)
LOC110531504 tri39 coding upstream 199501 13211515 ~ 13217001 (-)
LOC110531502 LOC106577948 coding upstream 338106 13350120 ~ 13367176 (-)
sb:cb1081 LOC106577950 coding upstream 430440 13442454 ~ 13483203 (-)
G772857 NA non-coding downstream 21416 12939794 ~ 12942007 (-)
G772803 NA non-coding downstream 117669 12845531 ~ 12845754 (-)
G772802 NA non-coding downstream 118029 12845096 ~ 12845394 (-)
G772798 NA non-coding downstream 122538 12840210 ~ 12840885 (-)
G772797 NA non-coding downstream 124768 12837266 ~ 12838655 (-)
G772914 NA non-coding upstream 67758 13079772 ~ 13084925 (-)
G772924 NA non-coding upstream 90015 13102029 ~ 13102298 (-)
G772934 NA non-coding upstream 99888 13111902 ~ 13112213 (-)
G772946 LOC106577942 non-coding upstream 185490 13197504 ~ 13199073 (-)
G771614 NA other downstream 992069 11970904 ~ 11971354 (-)
G771540 LOC106577916 other downstream 1074708 11870589 ~ 11916867 (-)
LOC110532912 LOC106577883 other downstream 1174854 11759145 ~ 11788765 (-)
LOC110531452 LOC106577886 other downstream 1261840 11698392 ~ 11701613 (-)
G771457 NA other downstream 1333835 11628616 ~ 11629588 (-)
G773163 NA other upstream 578239 13586326 ~ 13666937 (-)
G773168 NA other upstream 685165 13697179 ~ 13699328 (-)
LOC110531538 NA other upstream 968314 13977459 ~ 13987582 (-)
LOC118966145 LOC106599223 other upstream 1237387 14249401 ~ 14254157 (-)
G774427 LOC106578022 other upstream 1712040 14724054 ~ 14724522 (-)

Expression


Co-expression Network