XLOC_026932 (phtf2)


Basic Information

Item Value
gene id XLOC_026932
gene name phtf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31259 ~ 45642 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053194
ATGGCGTCTAAGGTGCGAGATGCCGTGCTGTGGTACCAGAAGAAGATCGGAGCATATGACCAGCAGATCTGGGAGAAATCAGTGGAGCAGCGCGAGATCAAGTTTATCAGGCGGGGTCTGCGGAATAAGCCGAAGAAAACAGGTCATGTGAAGCCCGAGCTGATTGACGTGGACCTGGTCAGAGGGTCTGCGTTTGCGAAGGCGAAGCCGGAGAGCCCCTGGACGTCTCTGACCCGGAAGGGGATTGTGCGTGTGGTGTTCTTCCCTTTCTTCTTCCGCTGGTGGACTCAGGTGACGTCCAGAGCCGTGTTTTACCTGCTGCTGACGCTGTACCTGCTGCAGGtgctgGCAGCGCTCCTCTTCTTCTCCATCTCCACTCCTCATGCTGTGCCGCTGACGGAGGTGTTCGGCTCCACCTGGCTGATGCTGCTGCTGGGCACCGTCCACTGCCAGATCGTCTCCACACACACTCCCAAGAGCagcggcagcagcagcagcgggaAACGCCGCAGGCGGTTAAGGAAAGCGCTGCGAGTGGACGTGCGCAGGGATTGTGACGGCTCCAGCACCACTGACTCCCCGCAGGAGGGGGCGCCGCTGGGCTCGGGCTCCGCCAGCTCACACTGCCTCCTCACAGCGCTGCGCAAGCTCTACACACACATCTGTACAGCGGGCAGGTCCCGAAAGGCGAAGCTGTCGATGGATAAATCCACGGAGACGGACAACGGTTACGTGTCTCTGGACGGACGCATCACCAGCCGGAGCAGCGAGGAGCGACTGCAGCACGACACACACcacacacacacacagtctgctgCACTCAAGGGTTACTGA
>TCONS_00057101
ACCTATTTCACAATTCACCTGTTTAAAGCTGCTGCTTGATGAGGtcacagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtctggGTGGAGTGTTTTGTAGGCATTTAAAACTGTGGTGTGTGCAATAGTAATCCAAATTATTTGACACTAAAAATGTAAGCAGACGTGTGTTTGATTGCGCagacgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtgctgGCAGCGCTCCTCTTCTTCTCCATCTCCACTCCTCATGCTGTGCCGCTGACGGAGGTGTTCGGCTCCACCTGGCTGATGCTGCTGCTGGGCACCGTCCACTGCCAGATCGTCTCCACACACACTCCCAAGAGCagcggcagcagcagcagcgggaAACGCCGCAGGTCCCGAAAGGCGAAGCTGTCGATGGATAAATCCACGGAGACGGACAACGGTTACGTGTCTCTGGACGGACGCATCACCAGCCGGAGCAGCGAGGAGCGACTGCAGCACGACACACACTGCGACCTGCTGCGTACACACACACCAC
>TCONS_00053196
tgctgGCAGCGCTCCTCTTCTTCTCCATCTCCACTCCTCATGCTGTGCCGCTGACGGAGGTGTTCGGCTCCACCTGGCTGATGCTGCTGCTGGGCACCGTCCACTGCCAGATCGTCTCCACACACACTCCCAAGAGCagcggcagcagcagcagcgggaAACGCCGCAGGCGGTTAAGGAAAGCGCTGCGAGTGGACGTGCGCAGGGATTGTGACGGCTCCAGCACCACTGACTCCCCGCAGGAGGGGGCGCCGCTGGGCTCGGGCTCCGCCAGCTCACACTGCCTCCTCACAGCGCTGCGCAAGCTCTACACACACATCTGTACAGCGGGCAGGTCCCGAAAGGCGAAGCTGTCGATGGATAAATCCACGGAGACGGACAACGGTTACGTGTCTCTGGACGGACGCATCACCAGCCGGAGCAGCGAGGAGCGACTGCAGCACGACACACACTGCGACCTGCTGCGTACACACACACCACTGCTGCCACCACCGCCCCCGCCGCACACTGGgaaggtgaacacacacacaaatacttagAAACATAcacaaagagacacacacacacacacacacacacacacacacactaatgtgaCTGTAGGCAGATGTGAGTCCTCAGGACAGACCAGCGTCCTCATAAACACACCGCACTGTGCACGTGTGTGTCCTCATAAATCACACTCACCTGTTCTCGTCCGCAGTGTGTGTCGGAGGCTGCAGGTGTGCGTGCGGGCCACAATCTGTCAGACGAGGCGTCCAGTGAAGAAGATCCAGAGAACTACAGCGCCGTCCGCAAGAGCAGCGACTGCACACTGCGCaaccgcaaacacacacactacaagaAGATGTACAGCGCagaggtaaacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacactgcgcaactgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacactgcgcaactgcaaacacacacactacaagaAGATGTACAGTgcagaggtacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgcaaccgcaaacacacacactacaagaAGATGTACAGCGCAGAGGTaaacacacacttactcacacacactctctctctctctctctcctcctgcaGGACGCAGTGGCGTGTGGCGCCGGCTGTAGTCCGCGCTGCTGCAGCATGCGTGCGCAGGACTCGTGCAGTGTGCGGCAGGAGTCGGAGACGGAGGATGTGCTGTGGGAGGAGTTCCTGCACTGCGCTGAGTGCCGCTCGTCCTGCAGCAGCGAGACCGACGCAGACACCACAGCAGCAGTGTGTGCGTCCGCCAAGAAGGAGTTCAGGGACGACCCCTTCCAGCAGGGTCACCTGCCGTGGCTGCACAGCTCTAACCCGGGTCTGGAGCGCGTCAGTGCAATCGTGTGGGAAGGAAACGAGTGCAAGAAAGCAGAGATGTCTGTGCTGGAGATCAGCGGCATGATCATGAAcaggGTCAATCTCTACACCCCGGGCGTGGGTTATCAGATCCTGGGCAGTGTGGTGTGTGTGGCTCTGGGCGTGACGCCGCTGCTGTTCCGGCTCTTCCAGCACAGGGATGTGGATCAGCTGTCGGCTGCTGAGCTGCTGCAGGCGGCGCTGGGCTCTGCTGACCCGCTGCTGCAGGCCACCGTCATCATCAGCCTGCTGGTCCGGGTCTGCCTCGTCTGGCTCTTCTTCTTCCTGCTCAGCGTCGCAGAGAGGACCTACAGACAGcgcCTGCTGTTTGCGAAGCTGTTTGGTCACCTGACCTCGGCGCGGAGAGCCAGAAAATCTGAAGTTCCTCATTTCCGGCTGAAGAAGGTGCAGAACATCAAGATGTGGCTGTCGCTGCGCTCATACCtgaagCGTCGGGGGCCGCAGCGCTCTGTGGATGTGATCGTGTCGTCTGCGTTTCTGCTCACACTGTCGGTGGTGTTCATCTGCTGCGCACAGGTCAGTGTGTGTgcgagactgtgtgtgtgtgtgtgtgctgatgaaGTGTGTGTTCACTGccggactgtgtgtgtgtgtgtgtgtgtgtgtgtcctgcagctGCTGCACGTGCACGAGACGTTCCTGGAGTTCCACTATAACTGGGAGCTGCTGATCTGGAGTGTGTCGCTGTCGCTCTACCTGCTGCGCTTCGTCACACTCGGCTCCGAGACCAGCAAGAAGTACAGCAACACCTCCATCCTGCTGACCGAGcagATTAACCTCTACTTGAAAATGGAGAAGAAACCAAACAAGAAGGAGGAGCTGACCCTGGTCAACAACGTGCTCAAGCTGGCCACCAAACTACTGAAGgagcTGGACGCCCCGTTCCGCCTGTACGGTCTGACCATGAACCCTCTGCTCTACAACATCACTCAGGTGGTCATCCTGTCCGCGGTGTCCGGCGTCATCAGTGACCTGCTGGGCTTCAACCTCAAGctgTGGAAGATTAAGTCATGA
>TCONS_00053195
tgctgGCAGCGCTCCTCTTCTTCTCCATCTCCACTCCTCATGCTGTGCCGCTGACGGAGGTGTTCGGCTCCACCTGGCTGATGCTGCTGCTGGGCACCGTCCACTGCCAGATCGTCTCCACACACACTCCCAAGAGCagcggcagcagcagcagcgggaAACGCCGCAGGCGGTTAAGGAAAGCGCTGCGAGTGGACGTGCGCAGGGATTGTGACGGCTCCAGCACCACTGACTCCCCGCAGGAGGGGGCGCCGCTGGGCTCGGGCTCCGCCAGCTCACACTGCCTCCTCACAGCGCTGCGCAAGCTCTACACACACATCTGTACAGCGGGCAGGTCCCGAAAGGCGAAGCTGTCGATGGATAAATCCACGGAGACGGACAACGGTTACGTGTCTCTGGACGGACGCATCACCAGCCGGAGCAGCGAGGAGCGACTGCAGCACGACACACACTGCGACCTGCTGCGTACACACACACCACTGCTGCCACCACCGCCCCCGCCGCACACTGGgaaggtgaacacacacacaaatacttagAAACATAcacaaagagacacacacacacacacacacacacacacacacactaatgtgaCTGTAGGCAGATGTGAGTCCTCAGGACAGACCAGCGTCCTCATAAACACACCGCACTGTGCACGTGTGTGTCCTCATAAATCACACTCACCTGTTCTCGTCCGCAGTGTGTGTCGGAGGCTGCAGGTGTGCGTGCGGGCCACAATCTGTCAGACGAGGCGTCCAGTGAAGAAGATCCAGAGAACTACAGCGCCGTCCGCAAGAGCAGCGACTGCACACTGCGCaaccgcaaacacacacactacaagaAGATGTACAGCGCagaggtaaacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacactgcgcaactgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacactgcgcaactgcaaacacacacactacaagaAGATGTACAGTgcagaggtacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgcaaccgcaaacacacacactacaagaAGATGTACAGCGCAGAGGTaaacacacacttactcacacacactctctctctctctctctcctcctgcaGGACGCAGTGGCGTGTGGCGCCGGCTGTAGTCCGCGCTGCTGCAGCATGCGTGCGCAGGACTCGTGCAGTGTGCGGCAGGAGTCGGAGACGGAGGATGTGCTGTGGGAGGAGTTCCTGCACTGCGCTGAGTGCCGCTCGTCCTGCAGCAGCGAGACCGACGCAGACACCACAGCAGCAGTGTGTGCGTCCGCCAAGAAGGAGTTCAGGGACGACCCCTTCCAGCAGGGTCACCTGCCGTGGCTGCACAGCTCTAACCCGGGTCTGGAGCGCGTCAGTGCAATCGTGTGGGAAGGAAACGAGTGCAAGAAAGCAGAGATGTCTGTGCTGGAGATCAGCGGCATGATCATGAAcaggGTCAATCTCTACACCCCGGGCGTGGGTTATCAGATCCTGGGCAGTGTGGTGTGTGTGGCTCTGGGCGTGACGCCGCTGCTGTTCCGGCTCTTCCAGCACAGGGATGTGGATCAGCTGTCGGCTGCTGAGCTGCTGCAGGCGGCGCTGGGCTCTGCTGACCCGCTGCTGCAGGCCACCGTCATCATCAGCCTGCTGGTCCGGGTCTGCCTCGTCTGGCTCTTCTTCTTCCTGCTCAGCGTCGCAGAGAGGACCTACAGACAGcgcCTGCTGTTTGCGAAGCTGTTTGGTCACCTGACCTCGGCGCGGAGAGCCAGAAAATCTGAAGTTCCTCATTTCCGGCTGAAGAAGGTGCAGAACATCAAGATGTGGCTGTCGCTGCGCTCATACCtgaagCGTCGGGGGCCGCAGCGCTCTGTGGATGTGATCGTGTCGTCTGCGTTTCTGCTCACACTGTCGGTGGTGTTCATCTGCTGCGCACAGGTCAGTGTGTGTgcgagactgtgtgtgtgtgtgtgtgctgatgaaGTGTGTGTTCACTGccggactgtgtgtgtgtgtgtgtgtgtgtgtgtcctgcagctGCTGCACGTGCACGAGACGTTCCTGGAGTTCCACTATAACTGGGAGCTGCTGATCTGGAGTGTGTCGCTGTCGCTCTACCTGCTGCGCTTCGTCACACTCGGCTCCGAGACCAGCAAGAAGTACAGCAACACCTCCATCCTGCTGACCGAGcagATTAACCTCTACTTGAAAATGGAGAAGAAACCAAACAAGAAGGAGGAGCTGACCCTGGTCAACAACGTGCTCAAGCTGGCCACCAAACTACTGAAGgagcTGGACGCCCCGTTCCGCCTGTACGGTCTGACCATGAACCCTCTGCTCTACAACATCACTCAGGTGGTCATCCTGTCCGCGGTGTCCGGCGTCATCAGTGACCTGCTGGGCTTCAACCTCAAGGtactgctgcacacacacacacacacactctcttacacTGCTCTGCTAAccggctctctctctctctctctctgtgtgtttcagctgTGGAAGATTAAGTCATGA
>TCONS_00057102
gtttgtgtggtaaaGGCGGTTAAGGAAAGCGCTGCGAGTGGACGTGCGCAGGGATTGTGACGGCTCCAGCACCACTGACTCCCCGCAGGAGGGGGCGCCGCTGGGCTCGGGCTCCGCCAGCTCACACTGCCTCCTCACAGCGCTGCGCAAGCTCTACACACACATCTGTACAGCGGGGTCCCGAAAGGCGAAGCTGTCGATGGATAAATCCACGGAGACGGACAACGGTTACGTGTCTCTGGACGGACGCATCACCAGCCGGAGCAGCGAGGAGCGACTGCAGCACGACACACACTGCGACCTGCTGCGTACACACACACCACTGCTGCCACCACCGCCCCCGCCGCACACTGGgaagTGTGTGTCGGAGGCTGCAGGTGTGCGTGCGGGCCACAATCTGTCAGACGAGGCGTCCAGTGAAGAAGATCCAGAGAACTACAGCGCCGTCCGCAAGAGCAGCGACTGCACACTGCGCaaccgcaaacacacacactacaagaAGATGTAC
>TCONS_00053197
ATGTACAGCGCagaggtaaacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacactgcgcaactgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacacactgcacaaccgcaaacacacacactacaagaAGATGTACAGCgcagaggtacacacacacacactgcgcaactgcaaacacacacactacaagaAGATGTACAGTgcagaggtacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgcaaccgcaaacacacacactacaagaAGATGTACAGCGCAGAGGTaaacacacacttactcacacacactctctctctctctctctcctcctgcaGGACGCAGTGGCGTGTGGCGCCGGCTGTAGTCCGCGCTGCTGCAGCATGCGTGCGCAGGACTCGTGCAGTGTGCGGCAGGAGTCGGAGACGGAGGATGTGCTGTGGGAGGAGTTCCTGCACTGCGCTGAGTGCCGCTCGTCCTGCAGCAGCGAGACCGACGCAGACACCACAGCAGCAGTGTGTGCGTCCGCCAAGAAGGAGTTCAGGGACGACCCCTTCCAGCAGGGTCACCTGCCGTGGCTGCACAGCTCTAACCCGGGTCTGGAGCGCGTCAGTGCAATCGTGTGGGAAGGAAACGAGTGCAAGAAAGCAGAGATGTCTGTGCTGGAGATCAGCGGCATGATCATGAAcagggtgagtgtgtgtgtgtgtgtgcgcttgcgtgcgtgtatgtgtgtgaacctGTTCTCCTCTGTCCTCCTGCAGGTCAATCTCTACACCCCGGGCGTGGGTTATCAGATCCTGGGCAGTGTGGTGTGTGTGGCTCTGGGCGTGACGCCGCTGCTGTTCCGGCTCTTCCAGCACAGGGATGTGGATCAGCTGTCGGCTGCTGAGCTGCTGCAGGCGGCGCTGGGCTCTGCTGACCCGCTGCTGCAGGCCACCGTCATCATCAGCCTGCTGGTCCGGGTCTGCCTCGTCTGGCTCTTCTTCTTCCTGCTCAGCGTCGCAGAGAGGACCTACAGACAGcgcCTGCTGTTTGCGAAGCTGTTTGGTCACCTGACCTCGGCGCGGAGAGCCAGAAAATCTGAAGTTCCTCATTTCCGGCTGAAGAAGGTGCAGAACATCAAGATGTGGCTGTCGCTGCGCTCATACCtgaagCGTCGGGGGCCGCAGCGCTCTGTGGATGTGATCGTGTCGTCTGCGTTTCTGCTCACACTGTCGGTGGTGTTCATCTGCTGCGCACAGctGCTGCACGTGCACGAGACGTTCCTGGAGTTCCACTATAACTGGGAGCTGCTGATCTGGAGTGTGTCGCTGTCGCTCTACCTGCTGCGCTTCGTCACACTCGGCTCCGAGACCAGCAAGAAGTACAGCAACACCTCCATCCTGCTGACCGAGcagATTAACCTCTACTTGAAAATGGAGAAGAAACCAAACAAGAAGGAGGAGCTGACCCTGGTCAACAACGTGCTCAAGCTGGCCACCAAACTACTGAAGgagcTGGACGCCCCGTTCCGCCTGTACGGTCTGACCATGAACCCTCTGCTCTACAACATCACTCAGGTGGTCATCCTGTCCGCGGTGTCCGGCGTCATCAGTGACCTGCTGGGCTTCAACCTCAAGGtactgctgcacacacacacacacacactctcttacacTGCTCTGCTAAccggctctctctctctctctctctgtgtgtttcagctgTGGAAGATTAAGTCATGA
>TCONS_00057103
gtacacacacacacacactcactgctcctcatacacacactcatctaatctctctctctctctcggtgtGTGTGCAGCGTCGGGGGCCGCAGCGCTCTGTGGATGTGATCGTGTCGTCTGCGTTTCTGCTCACACTGTCGGTGGTGTTCATCTGCTGCGCACAGctGCTGCACGTGCACGAGACGTTCCTGGAGTTCCACTATAACTGGGAGCTGCTGATCTGGAGTGTGTCGCTGTCGCTCTACCTGCTGCGCTTCGTCACACTCGGCTCCGAGACCAGCAAGAAGTACAGCAACACCTCCATCCTGCTGACCGAGcagATTAACCTCTACTTGAAAATGGAGAAGAAACCAAACAAGAAGGAGGAGCTGACCCTGGTCAACAACGTGCTCAAGCTGGCCACCAAACTACTGAAGgagcTGGACGCCCCGTTCCGCCTGTACGGTCTGACCATGAA

Function

symbol description
phtf2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PHTF2 (putative homeodomain transcription factor 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040711-4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PHTF2 (putative homeodomain transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000102123 ENSDARG00000114503

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053194 False 834 mRNA 0.60 9 31259 45642
TCONS_00057101 False 580 lncRNA 0.54 2 38079 41234
TCONS_00053196 False 2671 mRNA 0.57 10 38344 45396
TCONS_00053195 False 2755 mRNA 0.57 9 38344 45396
TCONS_00057102 False 508 lncRNA 0.62 3 40370 41607
TCONS_00053197 False 1881 mRNA 0.56 7 41602 45396
TCONS_00057103 True 457 lncRNA 0.55 4 44353 45206

Neighbor

gene id symbol gene type direction distance location
XLOC_026933 mansc1 coding downstream 23977 69619 ~ 72011 (+)
XLOC_026934 NA coding downstream 28557 74199 ~ 76671 (+)
XLOC_026935 lrp6 coding downstream 44406 90048 ~ 100007 (+)
XLOC_026936 crebl2 coding downstream 76067 121709 ~ 125402 (+)
XLOC_026937 NA coding downstream 200708 246350 ~ 246969 (+)
XLOC_026945 BX890562.1 non-coding downstream 348124 393766 ~ 393902 (+)
XLOC_026946 NA non-coding downstream 352875 398517 ~ 402485 (+)
XLOC_026947 BX890562.2 non-coding downstream 356984 402626 ~ 499946 (+)

Expression


Co-expression Network