XLOC_026937


Basic Information

Item Value
gene id XLOC_026937
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 246350 ~ 246969 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057491
CAGGAGTCAGCGGAGTGAAGGCGGAGacagaCGTCAGACGAAGAGGACACATGATCACATGATGACATCACGCTGAAATGCATCATGGAACTGGACTGAGAAAATACCTGCGGTCCCttagagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtccgtCTCATCTTTCTCTTTGTTTACTAAGGCACTGCTGTTGCCATGGAGACCAAGGCCTTTCCTTGTTTTCAACTTCAACTTTGCATTTCTCTATGGTGACTGAGGAAAAACGCAGGagctgcagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctctctctctctccatcacaGACACACTTATAAACAGAAACACATAAACAGAAACTCTCAccatactctctctctctgagagaactgtgaatcagtgtgtgtgaatgagggcgAGATGCTCAGATTAGCCATCAATGACTCCAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057491 True 523 lncRNA 0.47 2 246350 246969

Neighbor

gene id symbol gene type direction distance location
XLOC_026936 crebl2 coding upstream 120948 121709 ~ 125402 (+)
XLOC_026935 lrp6 coding upstream 146343 90048 ~ 100007 (+)
XLOC_026934 NA coding upstream 169679 74199 ~ 76671 (+)
XLOC_026933 mansc1 coding upstream 174339 69619 ~ 72011 (+)
XLOC_026932 phtf2 coding upstream 200708 31259 ~ 45642 (+)
XLOC_026938 CABZ01085275.1 coding downstream 32700 279669 ~ 282860 (+)
XLOC_026939 FO834823.1 coding downstream 41664 288633 ~ 292031 (+)
XLOC_026940 msgn1 coding downstream 59067 306036 ~ 308006 (+)
XLOC_026941 si:ch211-51e12.7 coding downstream 61719 308688 ~ 317971 (+)
XLOC_026942 tulp4a coding downstream 84382 331351 ~ 353924 (+)
XLOC_026945 BX890562.1 non-coding downstream 146797 393766 ~ 393902 (+)
XLOC_026946 NA non-coding downstream 151548 398517 ~ 402485 (+)
XLOC_026947 BX890562.2 non-coding downstream 155657 402626 ~ 499946 (+)
XLOC_026948 BX890562.4 non-coding downstream 172690 419659 ~ 419774 (+)
XLOC_026949 AL845512.1 non-coding downstream 307298 554267 ~ 554384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G273032 NA non-coding CI01000068 null 996852 ~ 999620 (-)