G773535 (LOC106577997)


Basic Information

Item Value
gene id G773535
gene name LOC106577997
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14213449 ~ 14216852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU881325
CCTGGATCATTCCCACTTGGAAGTTTTTAATTCACAAGCACAGTCAAAGTAATGGTCAACTGAAATCACACGGCAACCGAGACAAACACACCAACATGGATAACATCCATTACAGAACTCAAGGTTATACTAAGTCAAACTGTATTTCCTGACACAAATAAGTAAGCTAAAAAAGAAACAAGCAAAACCATTCAGGGCAAAGAAAACGGCATACATTAGACAATCCTGGCATGAAATCTTCCTATACATGTCTGTTTCATTGTTTACGATTTTTATAATATGGTCATTGTAAAATCTTCCAACTCCAGCACCACATTTCACGGGCCTAGGTGTGTAAAAATGTCATTGCACAGTGCCACCTGCTGGTGGACGCAGCAGGTGCCAAGATCCTCCAGTCCAATGGTTTTAAAACCTCTCGGGACCCCCAGATGTTTCACAATGTTGTGGAGCCCTGAACTAACTCGTCTGATTGCCCTAGTCAAGAAcatgatgattagttgaatcaggtgtgctagctgtGGAATAGATCAAAAACATGGAACGACTGGGGGTctctgaggagaggtttgagatcCACTGTATCCGGACTAGTACAACTAGAATAAAAGTATTTTTCAAGATACATACGGTATACATAAAGAAAATCTTTGATCTGGGGCCAAATAATTAGCCTGGTCCACCAACCTGACTGCTGCGCACGCTCTCTCATTTCATTTCAATTCACAAATAATGTAAATGGAGAGATCAGGATGGCCGTATGAGGCTACAAACTAATACATCAGAGAGAAACCCAAAGAGAAGAAAAGGGACAGATATTTGCTTGACATAACTGGTAGAGTGTTACTGAATGTGTAGGTGAGCACACGTTCAGAATGGTATAGTGGAAATGTCCATATGAATAGTGAGTTCAGTAGGAACAGCTGTCCATGTACTGCATGTGTGTTGCTATGTAATTATACACATTTCATTTTGTGTAtgtcagggagtgtgtgtgtgtgcctgtatgtatGTAAGTGTGTGCGAACAGACAATCTTGCGGTGTTTAAGAGTCGTCTCCGTTGGCGCTATCTCCATCAtcctcaccttcctcctcttcatcgtcATCTTCCCTTCCCCGACTCTTCACctcctcctcctcctccagtaggtctccctcctcctcttcggAGTCATTGAGCAGttggctctccctctccctcttcaagCTCTCCTCCTTCTTTCCTCCACAGTGGAGAGGAGACACCTCCCCGAGTTCCGGCTTCCCACTACTCTTCATgtctggggagagagggggatgggagggagaggttTATTGATATACAAAAATGTGTTGTTTCAAACCTAATGTTTGAAAATGCAATGGGCAACAATGTGTACTTCCTCACTAGTGTGTGTCCCGTCCTACCTAACTTCTTGGTGTGGTCCTTCTCCATGCGTTCCAGACTCTCCAGCAGGTAGTCCACCTTGTGTTTGATCTGGGTCAGCTCTCTCTTGATGGTCTGCAGGTCATCTGCCTTCActgggttagagagaggggataaaAAGTGTCAGAGGCATACATTAACAGTAGGTCTGGATTTCACTTCCATATAATGAACATGGATTCATGTGTCTACCGGGTAAATGACTGGAGTCAATTCAGAGTTAgtgtgtggttgtattgtgtgTAGTGGGGCTTGCAATACCAGCATTGTGGGTTTGATTCacgggaccacccatacgtaaaaacACATGCAAGCATGAGTACGTCGCTTTGGATTAAAGCATCTGCTAA
>TU881329
CCTGGATCATTCCCACTTGGAAGTTTTTAATTCACAAGCACAGTCAAAGTAATGGTCAACTGAAATCACACGGCAACCGAGACAAACACACCAACATGGATAACATCCATTACAGAACTCAAGGTTATACTAAGTCAAACTGTATTTCCTGACACAAATAAGTAAGCTAAAAAAGAAACAAGCAAAACCATTCAGGGCAAAGAAAACGGCATACATTAGACAATCCTGGCATGAAATCTTCCTATACATGTCTGTTTCATTGTTTACGATTTTTATAATATGGTCATTGTAAAATCTTCCAACTCCAGCACCACATTTCACGGGCCTAGGTGTGTAAAAATGTCATTGCACAGTGCCACCTGCTGGTGGACGCAGCAGGTGCCAAGATCCTCCAGTCCAATGGTTTTAAAACCTCTCGGGACCCCCAGATGTTTCACAATGTTGTGGAGCCCTGAACTAACTCGTCTGATTGCCCTAGTCAAGAAcatgatgattagttgaatcaggtgtgctagctgtGGAATAGATCAAAAACATGGAACGACTGGGGGTctctgaggagaggtttgagatcCACTGTATCCGGACTAGTACAACTAGAATAAAAGTATTTTTCAAGATACATACGGTATACATAAAGAAAATCTTTGATCTGGGGCCAAATAATTAGCCTGGTCCACCAACCTGACTGCTGCGCACGCTCTCTCATTTCATTTCAATTCACAAATAATGTAAATGGAGAGATCAGGATGGCCGTATGAGGCTACAAACTAATACATCAGAGAGAAACCCAAAGAGAAGAAAAGGGACAGATATTTGCTTGACATAACTGGTAGAGTGTTACTGAATGTGTAGGTGAGCACACGTTCAGAATGGTATAGTGGAAATGTCCATATGAATAGTGAGTTCAGTAGGAACAGCTGTCCATGTACTGCATGTGTGTTGCTATGTAATTATACACATTTCATTTTGTGTAtgtcagggagtgtgtgtgtgtgcctgtatgtatGTAAGTGTGTGCGAACAGACAATCTTGCGGTGTTTAAGAGTCGTCTCCGTTGGCGCTATCTCCATCAtcctcaccttcctcctcttcatcgtcATCTTCCCTTCCCCGACTCTTCACCTcctcctcctcctcctccagtaggtctccctcctcctcttcggAGTCATTGAGCAGttggctctccctctccctcttcaagCTCTCCTCCTTCTTTCCTCCACAGTGGAGAGGAGACACCTCCCCGAGTTCCGGCTTCCCACTACTCTTCATgtCTAACTTCTTGGTGTGGTCCTTCTCCATGCGTTCCAGACTCTCCAGCAGGTAGTCCACCTTGTGTTTGATCTGGGTCAGCTCTCTCTTGATGGTCTGCAGGTCATCTGCCTTCAtggtgcgTGAGGTGGAGAccctgctctggctgctcctggaGGATGAGAAGTTGGTCTTGGTGCGTCGGCTGCCCcctgctcctccacctcctcttcctccaccgcCTCCACTCAAACTGACCCGGGGCCGCTTGGAGGGGATCACCGCCCGGGACagggggggaggaggtggagggggcacGCGGGACTGGTACGGGTACATCCTACAACAgcaaaaacaaacagcaaaaaaaaaa
>TU881330
CCTGGATCATTCCCACTTGGAAGTTTTTAATTCACAAGCACAGTCAAAGTAATGGTCAACTGAAATCACACGGCAACCGAGACAAACACACCAACATGGATAACATCCATTACAGAACTCAAGGTTATACTAAGTCAAACTGTATTTCCTGACACAAATAAGTAAGCTAAAAAAGAAACAAGCAAAACCATTCAGGGCAAAGAAAACGGCATACATTAGACAATCCTGGCATGAAATCTTCCTATACATGTCTGTTTCATTGTTTACGATTTTTATAATATGGTCATTGTAAAATCTTCCAACTCCAGCACCACATTTCACGGGCCTAGGTGTGTAAAAATGTCATTGCACAGTGCCACCTGCTGGTGGACGCAGCAGGTGCCAAGATCCTCCAGTCCAATGGTTTTAAAACCTCTCGGGACCCCCAGATGTTTCACAATGTTGTGGAGCCCTGAACTAACTCGTCTGATTGCCCTAGTCAAGAAcatgatgattagttgaatcaggtgtgctagctgtGGAATAGATCAAAAACATGGAACGACTGGGGGTctctgaggagaggtttgagatcCACTGTATCCGGACTAGTACAACTAGAATAAAAGTATTTTTCAAGATACATACGGTATACATAAAGAAAATCTTTGATCTGGGGCCAAATAATTAGCCTGGTCCACCAACCTGACTGCTGCGCACGCTCTCTCATTTCATTTCAATTCACAAATAATGTAAATGGAGAGATCAGGATGGCCGTATGAGGCTACAAACTAATACATCAGAGAGAAACCCAAAGAGAAGAAAAGGGACAGATATTTGCTTGACATAACTGGTAGAGTGTTACTGAATGTGTAGGTGAGCACACGTTCAGAATGGTATAGTGGAAATGTCCATATGAATAGTGAGTTCAGTAGGAACAGCTGTCCATGTACTGCATGTGTGTTGCTATGTAATTATACACATTTCATTTTGTGTAtgtcagggagtgtgtgtgtgtgcctgtatgtatGTAAGTGTGTGCGAACAGACAATCTTGCGGTGTTTAAGAGTCGTCTCCGTTGGCGCTATCTCCATCAtcctcaccttcctcctcttcatcgtcATCTTCCCTTCCCCGACTCTTCAcctcctcctcctccagtaggtctccctcctcctcttcggAGTCATTGAGCAGttggctctccctctccctcttcaagCTCTCCTCCTTCTTTCCTCCACAGTGGAGAGGAGACACCTCCCCGAGTTCCGGCTTCCCACTACTCTTCATgtCTAACTTCTTGGTGTGGTCCTTCTCCATGCGTTCCAGACTCTCCAGCAGGTAGTCCACCTTGTGTTTGATCTGGGTCAGCTCTCTCTTGATGGTCTGCAGGTCATCTGCCTTCAtggtgcgTGAGGTGGAGAccctgctctggctgctcctggaGGATGAGAAGTTGGTCTTGGTGCGTCGGCTGCCCcctgctcctccacctcctcttcctccaccgcCTCCACTCAAACTGACCCGGGGCCGCTTGGAGGGGATCACCGCCCGGGACagggggggaggaggtggagggggcacGCGGGACTGGTACGGGTACATCCTACAACAgcaaaaacaaacagcaaaaaaaaaa
>TU881332
CCTGGATCATTCCCACTTGGAAGTTTTTAATTCACAAGCACAGTCAAAGTAATGGTCAACTGAAATCACACGGCAACCGAGACAAACACACCAACATGGATAACATCCATTACAGAACTCAAGGTTATACTAAGTCAAACTGTATTTCCTGACACAAATAAGTAAGCTAAAAAAGAAACAAGCAAAACCATTCAGGGCAAAGAAAACGGCATACATTAGACAATCCTGGCATGAAATCTTCCTATACATGTCTGTTTCATTGTTTACGATTTTTATAATATGGTCATTGTAAAATCTTCCAACTCCAGCACCACATTTCACGGGCCTAGGTGTGTAAAAATGTCATTGCACAGTGCCACCTGCTGGTGGACGCAGCAGGTGCCAAGATCCTCCAGTCCAATGGTTTTAAAACCTCTCGGGACCCCCAGATGTTTCACAATGTTGTGGAGCCCTGAACTAACTCGTCTGATTGCCCTAGTCAAGAAcatgatgattagttgaatcaggtgtgctagctgtGGAATAGATCAAAAACATGGAACGACTGGGGGTctctgaggagaggtttgagatcCACTGTATCCGGACTAGTACAACTAGAATAAAAGTATTTTTCAAGATACATACGGTATACATAAAGAAAATCTTTGATCTGGGGCCAAATAATTAGCCTGGTCCACCAACCTGACTGCTGCGCACGCTCTCTCATTTCATTTCAATTCACAAATAATGTAAATGGAGAGATCAGGATGGCCGTATGAGGCTACAAACTAATACATCAGAGAGAAACCCAAAGAGAAGAAAAGGGACAGATATTTGCTTGACATAACTGGTAGAGTGTTACTGAATGTGTAGGTGAGCACACGTTCAGAATGGTATAGTGGAAATGTCCATATGAATAGTGAGTTCAGTAGGAACAGCTGTCCATGTACTGCATGTGTGTTGCTATGTAATTATACACATTTCATTTTGTGTAtgtcagggagtgtgtgtgtgtgcctgtatgtatGTAAGTGTGTGCGAACAGACAATCTTGCGGTGTTTAAGAGTCGTCTCCGTTGGCGCTATCTCCATCAtcctcaccttcctcctcttcatcgtcATCTTCCCTTCCCCGACTCTTCAcctcctcctcttcggAGTCATTGAGCAGttggctctccctctccctcttcaagCTCTCCTCCTTCTTTCCTCCACAGTGGAGAGGAGACACCTCCCCGAGTTCCGGCTTCCCACTACTCTTCATgtCTAACTTCTTGGTGTGGTCCTTCTCCATGCGTTCCAGACTCTCCAGCAGGTAGTCCACCTTGTGTTTGATCTGGGTCAGCTCTCTCTTGATGGTCTGCAGGTCATCTGCCTTCAtggtgcgTGAGGTGGAGAccctgctctggctgctcctggaGGATGAGAAGTTGGTCTTGGTGCGTCGGCTGCCCcctgctcctccacctcctcttcctccaccgcCTCCACTCAAACTGACCCGGGGCCGCTTGGAGGGGATCACCGCCCGGGACagggggggaggaggtggagggggcacGCGGGACTGGTACGGGTACATCCGGTCATAGTAATCTCTCTGGAAGTCATATTCCAAATCAAATGAAGAACTGTACATATCTCCCGCAGAGCGCTTCACAGTCTTCAATCTCTGATGCTTCGGTTCGCAAGCAAGGTtaatgtCCAGCACCTGTCCTACGATCATCCTCCCATCCTCGCCCCC
>TU881333
CCTGGATCATTCCCACTTGGAAGTTTTTAATTCACAAGCACAGTCAAAGTAATGGTCAACTGAAATCACACGGCAACCGAGACAAACACACCAACATGGATAACATCCATTACAGAACTCAAGGTTATACTAAGTCAAACTGTATTTCCTGACACAAATAAGTAAGCTAAAAAAGAAACAAGCAAAACCATTCAGGGCAAAGAAAACGGCATACATTAGACAATCCTGGCATGAAATCTTCCTATACATGTCTGTTTCATTGTTTACGATTTTTATAATATGGTCATTGTAAAATCTTCCAACTCCAGCACCACATTTCACGGGCCTAGGTGTGTAAAAATGTCATTGCACAGTGCCACCTGCTGGTGGACGCAGCAGGTGCCAAGATCCTCCAGTCCAATGGTTTTAAAACCTCTCGGGACCCCCAGATGTTTCACAATGTTGTGGAGCCCTGAACTAACTCGTCTGATTGCCCTAGTCAAGAAcatgatgattagttgaatcaggtgtgctagctgtGGAATAGATCAAAAACATGGAACGACTGGGGGTctctgaggagaggtttgagatcCACTGTATCCGGACTAGTACAACTAGAATAAAAGTATTTTTCAAGATACATACGGTATACATAAAGAAAATCTTTGATCTGGGGCCAAATAATTAGCCTGGTCCACCAACCTGACTGCTGCGCACGCTCTCTCATTTCATTTCAATTCACAAATAATGTAAATGGAGAGATCAGGATGGCCGTATGAGGCTACAAACTAATACATCAGAGAGAAACCCAAAGAGAAGAAAAGGGACAGATATTTGCTTGACATAACTGGTAGAGTGTTACTGAATGTGTAGGTGAGCACACGTTCAGAATGGTATAGTGGAAATGTCCATATGAATAGTGAGTTCAGTAGGAACAGCTGTCCATGTACTGCATGTGTGTTGCTATGTAATTATACACATTTCATTTTGTGTAtgtcagggagtgtgtgtgtgtgcctgtatgtatGTAAGTGTGTGCGAACAGACAATCTTGCGGTGTTTAAGAGTCGTCTCCGTTGGCGCTATCTCCATCAtcctcaccttcctcctcttcatcgtcATCTTCCCTTCCCCGActcttcaagCTCTCCTCCTTCTTTCCTCCACAGTGGAGAGGAGACACCTCCCCGAGTTCCGGCTTCCCACTACTCTTCATgtCTAACTTCTTGGTGTGGTCCTTCTCCATGCGTTCCAGACTCTCCAGCAGGTAGTCCACCTTGTGTTTGATCTGGGTCAGCTCTCTCTTGATGGTCTGCAGGTCATCTGCCTTCAtggtgcgTGAGGTGGAGAccctgctctggctgctcctggaGGATGAGAAGTTGGTCTTGGTGCGTCGGCTGCCCcctgctcctccacctcctcttcctccaccgcCTCCACTCAAACTGACCCGGGGCCGCTTGGAGGGGATCACCGCCCGGGACagggggggaggaggtggagggggcacGCGGGACTGGTACGGGTACATCCGGTCATAGTAATCTCTCTGGAAGTCATATTCCAAATCAAATGAAGAACTGTACATATCTCCCGCAGAGCGCTTCACAGTCTTCAATCTCTGATGCTTCGGTTCGCAAGCAAGGTtaatgtCCAGCACCTGTCCTACGATCATCCTCCCATCCTCGCCCCC
>TU881335
CCTGGATCATTCCCACTTGGAAGTTTTTAATTCACAAGCACAGTCAAAGTAATGGTCAACTGAAATCACACGGCAACCGAGACAAACACACCAACATGGATAACATCCATTACAGAACTCAAGGTTATACTAAGTCAAACTGTATTTCCTGACACAAATAAGTAAGCTAAAAAAGAAACAAGCAAAACCATTCAGGGCAAAGAAAACGGCATACATTAGACAATCCTGGCATGAAATCTTCCTATACATGTCTGTTTCATTGTTTACGATTTTTATAATATGGTCATTGTAAAATCTTCCAACTCCAGCACCACATTTCACGGGCCTAGGTGTGTAAAAATGTCATTGCACAGTGCCACCTGCTGGTGGACGCAGCAGGTGCCAAGATCCTCCAGTCCAATGGTTTTAAAACCTCTCGGGACCCCCAGATGTTTCACAATGTTGTGGAGCCCTGAACTAACTCGTCTGATTGCCCTAGTCAAGAAcatgatgattagttgaatcaggtgtgctagctgtGGAATAGATCAAAAACATGGAACGACTGGGGGTctctgaggagaggtttgagatcCACTGTATCCGGACTAGTACAACTAGAATAAAAGTATTTTTCAAGATACATACGGTATACATAAAGAAAATCTTTGATCTGGGGCCAAATAATTAGCCTGGTCCACCAACCTGACTGCTGCGCACGCTCTCTCATTTCATTTCAATTCACAAATAATGTAAATGGAGAGATCAGGATGGCCGTATGAGGCTACAAACTAATACATCAGAGAGAAACCCAAAGAGAAGAAAAGGGACAGATATTTGCTTGACATAACTGGTAGAGTGTTACTGAATGTGTAGGTGAGCACACGTTCAGAATGGTATAGTGGAAATGTCCATATGAATAGTGAGTTCAGTAGGAACAGCTGTCCATGTACTGCATGTGTGTTGCTATGTAATTATACACATTTCATTTTGTGTAtgtcagggagtgtgtgtgtgtgcctgtatgtatGTAAGTGTGTGCGAACAGACAATCTTGCGGTGTTTAAGAGTCGTCTCCGTTGGCGCTATCTCCATCAtcctcaccttcctcctcttcatcgtcATctgctcctccacctcctcttcctccaccgcCTCCACTCAAACTGACCCGGGGCCGCTTGGAGGGGATCACCGCCCGGGACagggggggaggaggtggagggggcacGCGGGACTGGTACGGGTACATCCGGTCATAGTAATCTCTCTGGAAGTCATATTCCAAATCAAATGAAGAACTGTACATATCTCCCGCAGAGCGCTTCACAGTCTTCAATCTCTGATGCTTCGGTTCGCAAGCAAGGTtaatgtCCAGCACCTGTCCTACGATCATCCTCCCATCCTCGCCCCC

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein C-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU881325 False 1774 lncRNA 0.44 2 14213449 14215515
TU881329 False 1631 lncRNA 0.47 4 14213449 14216293
TU881330 False 1625 lncRNA 0.47 4 14213449 14216293
TU881332 False 1729 lncRNA 0.47 7 14213449 14216852
TU881333 False 1678 TUCP 0.47 7 14213449 14216852
TU881335 True 1393 lncRNA 0.45 5 14213449 14216852

Neighbor

gene id symbol gene type direction distance location
LOC110531546 NA coding upstream 73150 14110891 ~ 14140299 (+)
LOC118966143 NA coding upstream 104569 14100829 ~ 14108880 (+)
LOC110531541 LOC106594400 coding upstream 146513 14052243 ~ 14069229 (+)
LOC100301641 LOC100301641 coding upstream 197394 14009557 ~ 14017498 (+)
cbln11 LOC106577971 coding upstream 204028 14005801 ~ 14009421 (+)
si:ch211-63p21.1 LOC106577995 coding downstream 21646 14238498 ~ 14243012 (+)
LOC110531550 LOC106577826 coding downstream 46089 14262941 ~ 14277145 (+)
LOC118965997 NA coding downstream 73439 14290291 ~ 14293918 (+)
LOC110531556 LOC106578006 coding downstream 147389 14364241 ~ 14376287 (+)
LOC110532932 LOC106578030 coding downstream 204315 14421167 ~ 14429808 (+)
G773464 NA non-coding upstream 13218 14131578 ~ 14200231 (+)
G773465 NA non-coding upstream 22153 14168592 ~ 14191296 (+)
G773437 NA non-coding upstream 184921 14024873 ~ 14028528 (+)
G773543 NA non-coding downstream 21021 14237873 ~ 14238171 (+)
G773583 NA non-coding downstream 90775 14306630 ~ 14328474 (+)
G773590 NA non-coding downstream 121740 14338592 ~ 14338851 (+)
G773594 NA non-coding downstream 128329 14345181 ~ 14345438 (+)
G773597 NA non-coding downstream 130980 14347832 ~ 14348116 (+)
G772540 NA other upstream 290269 13918002 ~ 14018373 (+)
G772402 LOC106577959 other upstream 503006 13671810 ~ 13710443 (+)
LOC110531525 LOC106577958 other upstream 554778 13651265 ~ 13667682 (+)
G772241 LOC106577945 other upstream 820728 13391797 ~ 13392721 (+)
G773562 LOC106577828 other downstream 94616 14311468 ~ 14315250 (+)
G773601 NA other downstream 165818 14382670 ~ 14384166 (+)
G773983 LOC106577853 other downstream 1081606 15291949 ~ 15299214 (+)
G774021 NA other downstream 1158372 15375224 ~ 15377188 (+)

Expression


Co-expression Network