G773917


Basic Information

Item Value
gene id G773917
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15103857 ~ 15111275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU881783
gcaccacctgagcgacggcagtcgcaatctcacctacagtttcctctccctctttgttctgatctaccacaattgccctcgtatccacaatgccttcctcttgttgataatgggatatgtaggagggtgagccggtcaaggatcgattcagacaaggtggtctattgtatgacaagtgacagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagaagCCCCGCTAACAGTTtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggtcctgttgggccgtccgtcatccctctgagtcttgtcGTCCCGTTCCttgtcacacaatgttcagctaagaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagcagtaggctggtca
>TU881787
gcaccacctgagcgacggcagtcgcaatctcacctacagtttcctctccctctttgttctgatctaccacaattgccctcgtatccacaatgccttcctcttgttgataatgggatatgtaggagggtgagccggtcaaggatcgattcagacaaggtggtctattgtatgacaagtgacagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagaagCCCCGCTAACAGTTtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggtcctgttgggccgtccgtcatccctctgagtcttgtcGTCCCGTTCCttgtcacacaatgttcagctaagaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagcagtaggctggtca
>TU881785
ttcTCAAGCCGGACTATCGGAATATTCTAACTACTACTCATCCCTTACCGGTGTCTGTCACCGGACCGTTCTCATGCCGGACTATCGGGATATTCTAATTACCACATATGTTTACTTCACTGTCAATTTCAAGTCCATTATTTATGTAAAATTTACACAAAAATTCTTACCCACACTCGGTACTACTGATCGTAATTTGGTATGACTATTCGACAATATGCAAAGTTTGATAAAACAGGTTTTGCTTACCTTATTTTGTGGTCGACCAGAGATCAGTTTCCCGAGTTGAGCAGAATTGTTGTCCACCCCCGAATGGTTTTCACCTGTCCTCCGGGAACCGTCCTTTCACCAACTCGCCCCCTCACACCCACATCAACCACTCTGGACTGGGTCGTTAgtaaaccatcctctgctaccaagtttctgttgataatgggatatgtaggagggtgagccggtcaaggatcgattcagacaaggtggtctattgtatgacaagtgacagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagaagCCCCGCTAACAGTTtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggtcctgttgggccgtccgtcatccctctgagtcttgtcGTCCCGTTCCttgtcacacaatgttcagctaagaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagcagtaggctggtca

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU881783 False 630 lncRNA 0.47 3 15103857 15111275
TU881787 False 630 lncRNA 0.47 4 15103857 15111275
TU881785 True 953 lncRNA 0.45 3 15110242 15111275

Neighbor

gene id symbol gene type direction distance location
LOC110531575 NA coding upstream 131806 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 154786 14947255 ~ 14949071 (+)
LOC118966162 LOC106578024 coding upstream 191600 14905007 ~ 14912257 (+)
LOC110531577 LOC106578038 coding upstream 214613 14864590 ~ 14889244 (+)
LOC110532999 LOC106578032 coding upstream 251372 14849640 ~ 14852485 (+)
LOC118965999 LOC106596013 coding downstream 106322 15217597 ~ 15248137 (+)
LOC110531573 LOC106577850 coding downstream 141190 15252465 ~ 15262643 (+)
LOC118966002 NA coding downstream 231649 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 241007 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 359940 15471215 ~ 15505643 (+)
G773871 NA non-coding upstream 183636 14919218 ~ 14920221 (+)
G773811 LOC106578037 non-coding upstream 302730 14795963 ~ 14801127 (+)
G773761 NA non-coding upstream 370405 14728870 ~ 14733452 (+)
LOC110532934 LOC106578022 non-coding upstream 379999 14716449 ~ 14740445 (+)
G773752 NA non-coding upstream 403345 14700214 ~ 14700512 (+)
G773940 NA non-coding downstream 47524 15158799 ~ 15219494 (+)
G773808 NA non-coding downstream 53161 15164436 ~ 15236467 (+)
G773950 NA non-coding downstream 87489 15198764 ~ 15217371 (+)
G773799 LOC106577851 non-coding downstream 151506 15262781 ~ 15268676 (+)
G773601 NA other upstream 719691 14382670 ~ 14384166 (+)
G773583 NA other upstream 778024 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 788607 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 887005 14213449 ~ 14216852 (+)
G773437 NA other upstream 1075329 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 187183 15291949 ~ 15299214 (+)
G774021 NA other downstream 263949 15375224 ~ 15377188 (+)
G774065 NA other downstream 354085 15465360 ~ 15465624 (+)
G775142 NA other downstream 754814 15866089 ~ 15866708 (+)

Expression


Co-expression Network