G774606


Basic Information

Item Value
gene id G774606
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15104033 ~ 15111297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU882638
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACGACtagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca
>TU882640
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACgacaagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca
>TU882641
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACgacaagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca
>TU882643
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACGACtagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca
>TU882645
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACgacaagactcagagggatgacggacggcccaacaggaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca
>TU882647
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACgacaagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca
>TU882648
gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACgacaagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU882638 False 557 lncRNA 0.46 2 15104033 15111297
TU882640 False 557 lncRNA 0.46 2 15104033 15111297
TU882641 False 557 lncRNA 0.46 2 15104033 15111297
TU882643 False 557 lncRNA 0.46 2 15104033 15111297
TU882645 False 526 lncRNA 0.46 2 15104033 15111297
TU882647 False 510 lncRNA 0.46 3 15104033 15111297
TU882648 True 560 lncRNA 0.46 2 15104033 15111297

Neighbor

gene id symbol gene type direction distance location
LOC118966000 LOC106578026 coding downstream 68653 15018031 ~ 15035380 (-)
LOC110531581 LOC106578037 coding downstream 300821 14792676 ~ 14803212 (-)
LOC110531584 LOC106578021 coding downstream 411666 14687934 ~ 14692367 (-)
LOC110531585 LOC106608993 coding downstream 457279 14633925 ~ 14646754 (-)
LOC110531563 LOC106578017 coding downstream 477218 14531994 ~ 14626815 (-)
LOC110531572 LOC106577851 coding upstream 152869 15264166 ~ 15268722 (-)
LOC110531571 LOC106577852 coding upstream 158893 15270190 ~ 15281871 (-)
LOC118966001 NA coding upstream 173014 15284311 ~ 15285624 (-)
LOC110531570 LOC106577853 coding upstream 174586 15285883 ~ 15321030 (-)
trnaa-ugc-30 NA coding upstream 185884 15297181 ~ 15297253 (-)
G774569 NA non-coding downstream 133178 14966596 ~ 14970855 (-)
G774568 NA non-coding downstream 138028 14964991 ~ 14966005 (-)
G774518 NA non-coding downstream 223422 14874037 ~ 14880611 (-)
G774513 LOC106578038 non-coding downstream 227157 14864354 ~ 14876876 (-)
G774491 NA non-coding downstream 269146 14834623 ~ 14834887 (-)
G774617 NA non-coding upstream 3929 15115226 ~ 15181249 (-)
G774618 NA non-coding upstream 6370 15117667 ~ 15180992 (-)
G774636 NA non-coding upstream 43796 15155093 ~ 15217236 (-)
G774641 NA non-coding upstream 47824 15159121 ~ 15231035 (-)
G774523 NA non-coding upstream 52775 15164072 ~ 15236469 (-)
G774427 LOC106578022 other downstream 379511 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 849876 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 1116451 13977459 ~ 13987582 (-)
G773168 NA other downstream 1404705 13697179 ~ 13699328 (-)
G773163 NA other downstream 1511945 13586326 ~ 13666937 (-)
G774562 LOC106577809 other upstream 126761 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 241010 15352307 ~ 15361319 (-)
G774954 NA other upstream 513905 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 671060 15781909 ~ 15787666 (-)
G775139 NA other upstream 751023 15862320 ~ 15863834 (-)

Expression


Co-expression Network