G774617


Basic Information

Item Value
gene id G774617
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15115226 ~ 15181249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU882660
AAACTGTTTTAGACTCACCAGTAATGTTTATCTGGACTGGGTCACTGTACAGGGTGTAGTAGACTGGGTCTCCTCTCCCAGCTCTGCACCAGTACTGTCCTCCATCAGAGACACTGACCCTGCTGAGTGTGTAGGAGTATCTAGAGGCTGTGGTTACTGGAGTAGAGTCTGGTCTGTGTCTGTACCAGTAAAACTTCCATCCAGGCGACTCTACAGTACAGCTCAGTGTCACTCTGTCTCCTGTGAATACGTCTTCTTTGTCTGAAGTCAGTGTGGTCTTTGGCTGATAATCTGTGGGTATTTCAATAGGTTTGAATGGTaagataacaacaacaacaacaacaactaaaagACTCACTATTCACAGTAATAGAGACAACATCACTGATGGATGAAGATGTGGGTCTGGATattctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGATTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGATTCAGTaactctactgatgggatgaagATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGaatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGTGGATCTGGTATTAAGGTATTTATACTGGGACAAGCTAATCTCACTGTTGTCTTTGTACCATTTATAGCTCCAGTCACTGTAAGACCCAGCTGAACACGTCAGAGTGACTGTTTCTCCAGTGAAC
>TU882662
cggagagagaacagaacaacacCATCAGACTCTgagTAACAGTGACATCATCACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCagtaactctactgatggttGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGTATGAAGATGTGGGTCTGGatcttctctctccctgataCCAGTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTggattttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGTGGATCTGGTATTATGGTATTTATACTGGGACAAGCTAATCTCACTGTTGTCTTTGTACCATTTATAGCTCCAGTCACTGTAAGACCCAGCTGAACACGTCAGAGTGACTGTTTCTCCAGTGAAC

Function

NR:

description
PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU882660 False 1141 lncRNA 0.47 2 15115226 15179341
TU882662 True 1121 lncRNA 0.49 3 15115226 15181249

Neighbor

gene id symbol gene type direction distance location
LOC118966000 LOC106578026 coding downstream 79846 15018031 ~ 15035380 (-)
LOC110531581 LOC106578037 coding downstream 312014 14792676 ~ 14803212 (-)
LOC110531584 LOC106578021 coding downstream 422859 14687934 ~ 14692367 (-)
LOC110531585 LOC106608993 coding downstream 468472 14633925 ~ 14646754 (-)
LOC110531563 LOC106578017 coding downstream 488411 14531994 ~ 14626815 (-)
LOC110531572 LOC106577851 coding upstream 82917 15264166 ~ 15268722 (-)
LOC110531571 LOC106577852 coding upstream 88941 15270190 ~ 15281871 (-)
LOC118966001 NA coding upstream 103062 15284311 ~ 15285624 (-)
LOC110531570 LOC106577853 coding upstream 104634 15285883 ~ 15321030 (-)
trnaa-ugc-30 NA coding upstream 115932 15297181 ~ 15297253 (-)
G774606 NA non-coding downstream 3929 15104033 ~ 15111297 (-)
G774569 NA non-coding downstream 144371 14966596 ~ 14970855 (-)
G774568 NA non-coding downstream 149221 14964991 ~ 14966005 (-)
G774518 NA non-coding downstream 234615 14874037 ~ 14880611 (-)
G774513 LOC106578038 non-coding downstream 238350 14864354 ~ 14876876 (-)
G774673 NA non-coding upstream 67980 15249229 ~ 15250300 (-)
G774675 NA non-coding upstream 87781 15269030 ~ 15269299 (-)
G774681 NA non-coding upstream 103070 15284319 ~ 15285918 (-)
G774683 NA non-coding upstream 125101 15306350 ~ 15307817 (-)
G774728 NA non-coding upstream 224253 15405502 ~ 15408709 (-)
G774427 LOC106578022 other downstream 390704 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 861069 14249401 ~ 14254157 (-)
LOC110531538 NA other downstream 1127644 13977459 ~ 13987582 (-)
G773168 NA other downstream 1415898 13697179 ~ 13699328 (-)
G773163 NA other downstream 1523138 13586326 ~ 13666937 (-)
G774562 LOC106577809 other upstream 56809 15238058 ~ 15253973 (-)
G774702 LOC106577875 other upstream 171058 15352307 ~ 15361319 (-)
G774954 NA other upstream 443953 15625202 ~ 15625920 (-)
LOC110531603 groa other upstream 601108 15781909 ~ 15787666 (-)
G775139 NA other upstream 681071 15862320 ~ 15863834 (-)

Expression


Co-expression Network