G773799 (LOC106577851)


Basic Information

Item Value
gene id G773799
gene name LOC106577851
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15262781 ~ 15268676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU881651
gccaccttttgcagcaagtctcttggggtatgtctctataagcttggcacatctagccactgggatttttgcccattcttcaaggaaaaactgcaccagctccttcaagttggatgggttccgctggtgtacaacaatctttaagtcataccacagattctcaattggattgaggtctgggctttgactaggccattccaagacattaaaATGCTTCCCCTTACACCACTCAAGTGTGGCTTTAGcattgtgcttagggtcattgtcctgctggaaggtgaacctccgtcccagtctcaaatctctggaacactgaaacaggtttccctcaagaatttccctgtactttgcaccatccatcattccttcaattctgaccagtttccagtccctgccgatgaaaaacatccccacagcatgattctgccaccaccatgcttcacacaccaaaaatctcaattttagtcccatctgaccagagtaccttcttccatatgtttggggagtctcccctttttggagtttgtgctacaggatgcaaatttctgtttgaaaaagctagcctttgctttcctgattAATGTcatccttgcctggtctgtgagttttggtgggtggtaCTCTCTGGCAAGGTTATTGTGATggcatattctttccattttttaataatggatttaatggtgctccgcgGGATGTTCAaattttctgatatttttttataacccaaccctgatctgtacttctccacaacttgtctctgacctgtttggagagctccttggtcttcatggtgtcgcttgcttggtcgtgccccttgcttagtggtgttgcagactctggggcctttcagaacaggtgtatatttatttttataaatgttttatttatttcacctttatttaaccaggtaggccagttgagaacaagttctcatttacaactgagacctggccatgataaagcaaaaagtgcaatgatctgtaagctgctctgacagctgatgcttaaagttagtgagggagatatgagtctccaacttcagggatttttgcaatttgttccagtcattggcagcagagaactggaaggaaaggcggccaaagcaggagttggctttgagggtgaccagtgaaatatacctgctggagcgtgtgctacaggtgggtgctgctattgtgaccagtgagctgagataaggcggggatttacctagcaaagacgtatagataacctggagccagccgtagaaaaatgcttcttgaaattctcgattatcgtagatttatcggtggtgacagtgtttgttagcctcagtgcagtgggcagcagggaggaggtgctcttattctccatggactttacagtgtcccagaactttttggagtttatgctacaggatgcaaaaAAAAGtctgaaaaagctagcctttgctttcctaactgcctgtgcatattggttcctaactttcctgaaaagttgcatatactgagatcatgtgacagttcAACTCCTCTCTATAGGTAGGCTGGAGTTTTGGTTTGACGGCTCCGATGtttacctcctctctataggtaGGCTGGAGTTTTGGTTTGACGGCTCCGATGTTCAACTCCTCTCTATAGGTAGGCTGGAGTTTTGGTTTGACAGCTCCGATGTTCAACTCCTCTCTATAGGTAGGCTGGAGTTTTTTTCATTTCCCGAAAGTGTAGGACACAACTTGTTGATGCTTCGACTCTTGTTGAACCTGATTGATAAGCATGTGAGGGACTCTCTGAAAATATATGTTAAAAGACATCCGAACAGAAATCCTAAGAGCAATTTTATGATCCCGGGGACGCGgttctccccctccaccaccacgtCAGGCTTTGGCTGTTCATCTTGGCATATCTCCCTCACAACCTTAGAGGCGTTAGTGAGCCCGTTGCTGGCAGTACAGATGAAGATGACATTTCTGTTGGGGCTGTAAGACGCCCAGACAACAGAGGCGTTGGCGTTGGGACTCCCCCTCCAGAAGGAGCCGTCAAACGAAGCTTCTGGCTCCCAAGAAAATCTGGTGTCCTTCACCGAAGAGGAGCACTGAAGAGCCATCACACAGTGTCCGTCCTTCAGAACGCTGAAGACCTTTTGAACACTAGGCTCAACGAGACGCTCTGTCACAGTGAGTGGTACCTTACTGATCTGCTGCTCCCCCTGACTGTGTGTGAGGAGAACAGAGTAAACCAGTTCATCCCCTCTCTGAACATCTCTGATCTCCAAGTCGCCAGACGAGGTGTTGAGACTCAGTCGACTCTTAAACTTCCCGAGCCATTCTGTGTTGCTATTTCTGCTCCTGAATGTTGCGATCCAGGTGTCGTTGTTGTATATGGACCACGTTATCTTGGTGATGTGCCAGGATGGATTGGCTCCAGAGGATAAGGTGACAGACTCTCCCAGGTAGCCAATGGTATCTCCCA
>TU881653
CACAGTGAGTGGTACCTTACTGATCTGCTGCTCCCCCTGACTGTGTGTGAGGAGAACAGAGTAAACCAGTTCATCCCCTCTCTGAACATCTCTGATCTCCAAGTCGCCAGACGAGGTGTTGAGACTCAGTCGACTCTTAAACTTCCCGAGCCATTCTGTGTTGCTATTTCTGCTCCTGAATGTTGCGATCCAGGTGTCGTTGTTGTATATGGACCACGTTATCTTGGTGATGTGCCAGGATGGATTGGCTCCAGAGGATAAGGTGACAGACTCTCCCAGGTAGCCAATGGTATCTCCCATCACCACTGATAAGACtgttaggagagagagaactAAAAGTTCTACACGTATCATCTTCAACAGCACTTTTAAAATGGACCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU881651 False 2456 lncRNA 0.46 5 15262781 15266210
TU881653 True 382 lncRNA 0.48 2 15265912 15268676

Neighbor

gene id symbol gene type direction distance location
LOC110531573 LOC106577850 coding upstream 138 15252465 ~ 15262643 (+)
LOC118965999 LOC106596013 coding upstream 14676 15217597 ~ 15248137 (+)
LOC118936439 LOC106596013 coding upstream 76835 15085681 ~ 15185946 (+)
LOC110531575 NA coding upstream 290730 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 313710 14947255 ~ 14949071 (+)
LOC118966002 NA coding downstream 74248 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 83606 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 202539 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 254880 15523556 ~ 15561336 (+)
trnas-gcu-6 NA coding downstream 335642 15604318 ~ 15604399 (+)
G773808 NA non-coding upstream 26314 15164436 ~ 15236467 (+)
G773940 NA non-coding upstream 43287 15158799 ~ 15219494 (+)
G773950 NA non-coding upstream 45410 15198764 ~ 15217371 (+)
G773917 NA non-coding upstream 151506 15103857 ~ 15111275 (+)
G773973 NA non-coding downstream 6972 15275648 ~ 15276137 (+)
G773977 NA non-coding downstream 10199 15278875 ~ 15279216 (+)
G773979 NA non-coding downstream 11304 15279980 ~ 15280260 (+)
G773974 NA non-coding downstream 11743 15280419 ~ 15281635 (+)
G773980 NA non-coding downstream 14246 15282922 ~ 15283176 (+)
G773601 NA other upstream 878615 14382670 ~ 14384166 (+)
G773583 NA other upstream 936948 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 947531 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 1045929 14213449 ~ 14216852 (+)
G773437 NA other upstream 1234253 14024873 ~ 14028528 (+)
G773983 LOC106577853 other downstream 29782 15291949 ~ 15299214 (+)
G774021 NA other downstream 106548 15375224 ~ 15377188 (+)
G774065 NA other downstream 196684 15465360 ~ 15465624 (+)
G775142 NA other downstream 597413 15866089 ~ 15866708 (+)

Expression


Co-expression Network