G773994 (LOC106577853)


Basic Information

Item Value
gene id G773994
gene name LOC106577853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15307999 ~ 15308928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU881877
CGTGTTTCTGTACATCTAGGTTCTGTAGTGGTTTGTTGATTCTTTGGGAGGGGGTGCTGGTAAGTCCGGGGGGcaggggtggaggtggtggtggcggGGCTTCACCTCCCAGTGACGTCCTCTGATTGGGTAAGAGGTCAGCGGGGAGGGGTTGGAGGACGAGGGCGGCTGCTGAAGGGGGCGGTCCTTGAAGTGTCAGGGCAACATACGGCCCAGctggTGATGAGCTTCACCACCTCCTGGTGAGACATGGACGACACCAGCGAGCCGTTCacCTTTATGATTCTGTCTCCCTCGTGGACCCCTGCCTTG
>TU881879
gctttgtgaatacagaCCCAGGTGTGGTGCTCACCTGTAGTGGTTTGTTGATTCTTTGGGAGGGGGTGCTGGTAAGTCCGGGGGGcaggggtggaggtggtggtggcggGGCTTCACCTCCCAGTGACGTCCTCTGATTGGGTAAGAGGTCAGCGGGGAGGGGTTGGAGGACGAGGGCGGCTGCTGAAGGGGGCGGTCCTTGAAGTGTCAGGGCAACATACGGCCCAGACTTGATGAGCTTCACCACCTCCTGGTGAGACATGGACGACACCAGCGAGCCGTTCacCTTTATGATTCTGTCTCCCTCGTGGACCCCTGCCTTG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU881877 False 312 lncRNA 0.60 4 15307999 15308928
TU881879 True 323 lncRNA 0.60 3 15308268 15308928

Neighbor

gene id symbol gene type direction distance location
LOC110531573 LOC106577850 coding upstream 45356 15252465 ~ 15262643 (+)
LOC118965999 LOC106596013 coding upstream 59894 15217597 ~ 15248137 (+)
LOC118936439 LOC106596013 coding upstream 122053 15085681 ~ 15185946 (+)
LOC110531575 NA coding upstream 335948 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 358928 14947255 ~ 14949071 (+)
LOC118966002 NA coding downstream 33996 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 43354 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 162287 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 214628 15523556 ~ 15561336 (+)
trnas-gcu-6 NA coding downstream 295390 15604318 ~ 15604399 (+)
G773992 NA non-coding upstream 2616 15305167 ~ 15305383 (+)
G773991 NA non-coding upstream 3755 15303759 ~ 15304244 (+)
G773990 NA non-coding upstream 4876 15301780 ~ 15303123 (+)
G773989 NA non-coding upstream 6823 15300562 ~ 15301176 (+)
G773983 LOC106577853 non-coding upstream 8785 15291949 ~ 15299214 (+)
G773995 NA non-coding downstream 767 15309695 ~ 15310152 (+)
G773998 NA non-coding downstream 3305 15312233 ~ 15312482 (+)
G773997 NA non-coding downstream 4913 15313841 ~ 15314464 (+)
G774016 NA non-coding downstream 70422 15379350 ~ 15381388 (+)
G774024 NA non-coding downstream 129599 15438527 ~ 15444331 (+)
G773601 NA other upstream 923833 14382670 ~ 14384166 (+)
G773583 NA other upstream 982166 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 992749 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 1091147 14213449 ~ 14216852 (+)
G774021 NA other downstream 66296 15375224 ~ 15377188 (+)
G774065 NA other downstream 156432 15465360 ~ 15465624 (+)
G775142 NA other downstream 557161 15866089 ~ 15866708 (+)
G775306 NA other downstream 877348 16186276 ~ 16187450 (+)

Expression


Co-expression Network