G773997


Basic Information

Item Value
gene id G773997
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15313841 ~ 15314464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU881882
ATATTGTTTTGATATAAATGAAACACTTGCTGTTGCCAACAAAATGACGGTTATAACTGCAGCACTCACTTGTGTAGAGAATACTTGTTTTTTGATAAGCAAATAATGGCTGGTTACCTAGTTAATTCTGATAGAGGCCGAATGCCATCCGCGACATCACCTACGCTCTGTGACTGGGCACAAGCGTCGTCTATGACGCCGACGCGACAGGGGTCTAGCTGAAGCTAAAGAATTAGCCTGCCACTCAAATACATTCGCAAGGTAGAATCTGAAACGCTGCGACTGAGGCCAGTTATCCTTCTTGAATGTAATAGTATGTCCAGTGCCCCATTCGTAACAATGTGTTCATTAAACCTGCATTCATTTCTTTATGGAAAGACAGTCCATTCGATTCGTCGTGGCTTTCCAAACAACTCGCTTCATTTGATCAAACTGGTTCATTCCATTAGGTGAGATCCCGTTGTCCTATATTTCCTCGCATTCCCTGATTAATCCACATTTCTGATTGCATTCATATGCTCATGTATTTAATTGCAGCCTTCAAACCGATGTTCCATATTATGttgttattagctagctagtcCTCTCCCAGACAGTATTTGGTAGTTGTGTATGGATATCAAA
>TU881883
CCTAGTTAATTCTGATAGAGGCCGAATGCCATCCGCGACATCACCTACGCTCTGTGACTGGGCACAAGCGTCGTCTATGACGCCGACGCGACAGGGGTCTAGCTGAAGCTAAAGAATTAGCCTGCCACTCAAATACATTCGCAAGGTAGAATCTGAAACGCTGCGACTGAGGCCAGTTATCCTTCTTGAATGTAATAGTATGTCCAGTGCCCCATTCGTAACAATGTGTTCATTAAACCTGCATTCATTTCTTTATGGAAAGACAGTCCATTCGATTCGTCGTGGCTTTCCAAACAACTCGCTTCATTTGATCAAACTGGTTCATTCCATTAGGTGAGATCCCGTTGTCCTATATTTCCTCGCATTCCCTGATTAATCCACATTTCTGATTGCATTCATATGCTCATGTATTTAATTGCAGCCTTCAAACCGATGTTCCATATTATGttgttattagctagctagtcCTCTCCCAGACAGTATTTGGTAGTTGTGTATGGATATCAAA
>TU881884
AGCTGAAGCTAAAGAATTAGCCTGCCACTCAAATACATTCGCAAGGTAGAATCTGAAACGCTGCGACTGAGGCCAGTTATCCTTCTTGAATGTAATAGTATGTCCAGTGCCCCATTCGTAACAATGTGTTCATTAAACCTGCATTCATTTCTTTATGGAAAGACAGTCCATTCGATTCGTCGTGGCTTTCCAAACAACTCGCTTCATTTGATCAAACTGGTTCATTCCATTAGGTGAGATCCCGTTGTCCTATATTTCCTCGCATTCCCTGATTAATCCACATTTCTGATTGCATTCATATGCTCATGTATTTAATTGCAGCCTTCAAACCGATGTTCCATATTATGttgttattagctagctagtcCTCTCCCAGACAGTATTTGGTAGTTGTGTATGGATATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU881882 False 624 lncRNA 0.41 1 15313841 15314464
TU881883 False 508 lncRNA 0.43 1 15313957 15314464
TU881884 True 408 lncRNA 0.40 1 15314057 15314464

Neighbor

gene id symbol gene type direction distance location
LOC110531573 LOC106577850 coding upstream 51198 15252465 ~ 15262643 (+)
LOC118965999 LOC106596013 coding upstream 65736 15217597 ~ 15248137 (+)
LOC118936439 LOC106596013 coding upstream 127895 15085681 ~ 15185946 (+)
LOC110531575 NA coding upstream 341790 14949437 ~ 14972051 (+)
LOC118965998 NA coding upstream 364770 14947255 ~ 14949071 (+)
LOC118966002 NA coding downstream 28460 15342924 ~ 15348526 (+)
LOC110533001 LOC106577875 coding downstream 37818 15352282 ~ 15362094 (+)
LOC110531590 LOC106577858 coding downstream 156751 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 209092 15523556 ~ 15561336 (+)
trnas-gcu-6 NA coding downstream 289854 15604318 ~ 15604399 (+)
G773998 NA non-coding upstream 1359 15312233 ~ 15312482 (+)
G773995 NA non-coding upstream 3689 15309695 ~ 15310152 (+)
G773994 LOC106577853 non-coding upstream 4913 15307999 ~ 15308928 (+)
G773992 NA non-coding upstream 8458 15305167 ~ 15305383 (+)
G773991 NA non-coding upstream 9597 15303759 ~ 15304244 (+)
G774016 NA non-coding downstream 64886 15379350 ~ 15381388 (+)
G774024 NA non-coding downstream 124063 15438527 ~ 15444331 (+)
G774064 NA non-coding downstream 143827 15458291 ~ 15458506 (+)
G774069 NA non-coding downstream 154931 15469395 ~ 15469681 (+)
G774071 NA non-coding downstream 156502 15470966 ~ 15471165 (+)
G773983 LOC106577853 other upstream 14627 15291949 ~ 15299214 (+)
G773601 NA other upstream 929675 14382670 ~ 14384166 (+)
G773583 NA other upstream 988008 14306630 ~ 14328474 (+)
G773562 LOC106577828 other upstream 998591 14311468 ~ 14315250 (+)
G773535 LOC106577997 other upstream 1096989 14213449 ~ 14216852 (+)
G774021 NA other downstream 60760 15375224 ~ 15377188 (+)
G774065 NA other downstream 150896 15465360 ~ 15465624 (+)
G775142 NA other downstream 551625 15866089 ~ 15866708 (+)
G775306 NA other downstream 871812 16186276 ~ 16187450 (+)

Expression


Co-expression Network