G774024


Basic Information

Item Value
gene id G774024
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15438527 ~ 15444331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU881926
ATTTGGGAATGCCATGCAGACGGTACAGTGCCTCAAGACATAAGCAAGGCAAGGAGAAAGGGAGTATACATTATAGTCAATTGGGGTTATTCATTAGTCATAATACATTATGGGCAACATTTTCATGGTGCAAAAATCCTTTAAAACTCATCATCTGGAAGTGTGATTTAATTGGACACTTATTCAGCAATGCGCGTTATAAAAAGGCCACTGTTCATGCCTTGCTTAGTATAGTAAACTAGTTTATGCACTTTCTTATAACGCACATTGAAGAACAATGTCAAATTAAAATCACACTGCCAGATTATAATGAGTTTTAGGGTTTTTCTTTTGACAGATGTGAACCATTTTGCACCGTGGAAATGTCCCCCTTCATCTCCGTCAAGCATGCTGattctttgttttagtttttcCTATAAATGTGCTTAAAGTAATAAATGACTCAACATCGATCCATTGCAAAACATCACCACAACAATCCAGTTTGGTGTACAAAGATGCTCTTTCTCCCTAAAAATGTCTCCTCCAACACCAAGAGAAATGAAAGGCCTCAGAGTAAGATCATAGGTATTAGATAACAATAAGAGCTAGCACTACATCAAGCTGCCTTTATACTGTAAGTCTATATATAGCTTCTTCCCTAACCACATGTAATCACACACCATTACACTGTAACCTCACTTGACTGGGCCCAGATTCTCAATTAAGTCAACTTAGTTACAGCATAGTTACAAGTAAGTTCTTGATTGTGAGAATATAATATTTGATGTGACTAGGTAGCATTTAGGCAACAACGTTATTAAGTGTGAACGACAGTAGACTTGGGTGTCGACCCAGGGCGCAAAACTGTGGCCCAATTCCAATTCTGTCCCCTCCCTTTGAAATGTGCACTCGTTCACTCCGTGAGGATTTAAAACCATGGGATTGGTATTGGAGACATGGTATACTTTGAGTTTCTATGTGTAAGGCAGCATTGATGGCTTCCCTGTCCTGTgctgtgaagagagagggagcagccATGAGGTTGTCAGTCAGTGTGAGCCAATAGGGAGCAGACCAGGAGAACTTCATGGCTGGCTACATTTACTCAAACACCAGAGAGAGTCAGACTCCACACATCCAGGTCAGTGAGAGGTGACTGTGTGGGAAAGAGCATCACATCCTGATCATGGAGATCGAAGAATCAGTTGTATTTTGGTGAACCTTAAGGGGGGATTTGTATCGATTACCCCCCAAAACGCATCAAAAACCATCTGGTGCAGTGGTAGACTACTGAGTTTATTTTGTGCAGCACCAGTGTTTATGACTTTCGTGTAGGGCCCCCCATGGTCAGGATAGAAGAGTTAGGGAACAGGGATGGATCAGAGCTGGAGATCCCTACATTACCAACTCaccttccttccatccatccatcctttcctTAACTTCATTCATAAGACAGAGTGGGGACTCTCGTCTCTGCCCCCCACGGGCAATGCACTACTCAGCTGTTCAGACCACATGCCGGACACCTCagatgagtgggtgtgtgtgtattcaatCATCTCAACAGGAGGAGGAGATTCAGATACACGCATTGCAACCCACAGGTACAGAGGGTTGGTGTAGGGACAGAAGCTACCTCGAGAGAAATAGTCCCCATACCAAAGAAGTCCTATAGGAGTCCTGAGATTACAGTGAATCTGCAGGTAGTTGGGCCCTTACTGGGCCGGTCTGTCTTATAGGACGTTTTTGATAGGGCGAGAGGGCCATAGGGAACTCGCTGTTAAAAAACCTATTCCAAATGTTATCCTCCAGAGCAAGGTCAGTTTATCGGATTTAATTAGATAAGTTTGACTTGAGTCATTCAACTGCAAGGAGGTGGTGAATAGTGATTAAACTCCCATACACAGCCATGGCAAACCCAGCATCACAGTTTTAGCAAAGCAAAAAAACTCTCGCCCTACAAAGTCTCTGATGAGTTTATACTCTGTCCAGCCGTGTGACCCCACTAGGCCACCATACACGGTGTCCATTGTCATTCACTAGGTCTCTATGGTTATAGCCATAGCCAGGGGTGGGGGGGGATCCACATGTACCAAGCCTCAAAACAccaatgacatcacacacacacactctcagacacGGAGATTCagtgacacactcactcactctttaaACTACACACACGGTCTCTGGCTCTCAAACATGTagtcacagtcagtcacacacacacacacacagtctctctcagacacacatcagcaCAGTCACTGTAGGTGCTGCATGGTGAGAGACAGGACAAGTCACTGGAAGTCTGGTAGAAGACATCACAGCGTGAGCAGTGACCCCCAAAAGAAGCCCCCCGGGCAATGTCAACGCAGGTGAGGGGAGCTAcagagggggggtggggtggtGATGGCGGacgaggaggggggaggggtgtttCGGTCAAGGCACAGTCAGAGAGGGGGACAGTGCTGTTTCATTACCTTGGTGGAGAAGATTGAGTTCCCACTTCCCATTTGCCTGCGCGACGTTTATTGTCTTCCCCCTCTCACCTCACACCTGCTGGGTGGTGTCTGGGCGGCCGGTACCTATTTCAGTTGGAATAGTAGGTCAGTATGTACGAGGCTTTGGACAGAGAGCAGAGTGACATGCACATCTAACACAGCAGAGACAGACACATGGTGTTGGTGGTGAGGTTGTTGGGTAGGAGCAGACACACAGCAACCCCCCCACAGTCATTCTATCTGTGTGCCTCTCCCCAGGTCTCTGATGTTTGTGTTTGTCCACCCATTGTTAAAACAAGGAGTCATCTGCAAGCAAGTATTGCGCGCCACTCTACTCAACATTGACTCTGCAATTAAAATGGCATGAAATCGACACTAGTTTGGCACGAAGTGGAAATCAAAAAGATCAGAGGTGACGGAAGCTGTTTTCAGACATGAGCGCATGGTAACAGCAGGGTAACACAGTAGATGCCTTGTTGATGTACCTGTGAGGGGTATTGTCCCAGGTCTCTTTCCTCCTGAAGTATACACTTGTTCACAACTTCCCACATATGTTAAAGACATAGGATTAGCAGAGACATGGCCTAGAACCCTCAAACTTAACTCTGGATGTCAaagcctgatttagacctgggacaccaggcgggtgcaattaatgatcaggtagaatAGAACACAAGCAGgatccggacctcgtagggtcagagttgaatacaACTGGCCTAGGAGTTGGCACCATAAAAACATCCTCATTTCAGTCATTTCCTCTCGCAACAGTAAAGGGATGTGAACAAGTGCACAGTTGAGgagaaaatatatattattgGCACGCACCCAGGGTCTGTCTGACTGCGCTATAGGCCTAGAGTTTGGGtgaggctggagagaggagcGCTGACCCCAGACCAGACTTACCCCATCCACGAGCCAGACTAGATATGGGTCTGGTCATTACAACAAGGAAGGAGAGACGGGAAGGAGTACAAAAAGACGACGGAAAAACAAGAACGGGGAAATACATCCGAAACGCAGTTTTTTCTTTTCCTCACAGTAGTCAGAAacattctttattttttaaatgctgGGTATGTGTAGTATACATATTAAAAAGCATGCCTTTTTcctttttgttaaaaaaaaagaaatattttAAATAGTTCTAAAAATACGGTCAGAAACAAGGCAAGCAACAAGCATAACAAGAAAGGGTGTTTTTTTTCCTGATCGTCGAGATCCCACAGACgaaacttggtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgagacagagagattatATGCAAGATAAAATAGTAAGTCACTAAAATcacagggagaagaggaaggacacaGCGGGTTACGGGGGTAGTGAGTCGTCTTACAGCGGGGTGCAAGGATACGTCGGAACAGGGAGACTGAAAGATACTGCTCCATCTCTCATCACCATATCATCATCGGTGTGAACGTTACCGCACCACATTATCCTAACCCCTTTCCCTCCATCGCAGATTAAAGAGACTGACATGTAAGGGGGAAAAAAGCCCCTTAAAAAGGAGTTCTTCCCTCCGCTATTCGCACTTCACACAAAGCTTAGGCACAACGTTAAAGGGGAATTCCCACCCAAAAACAACATTTTGgtgtttgtttcattagtccgctgttgacatagtcccaaaatgttttgcttgtcagcaatcgagatatgtaactttcaaaacgCCGCATCATATGATGCTAAATGGATCATACAGGGATGacctgtattttgaaagttacatatcgtTGAAAATGGATTCATGAAACAAacaccaaaatatagtttttgggtggagttttcctttaaaccTCATTGAAACTCATGATTCTCTAGCAAGTCTAAAAAGTTAACTTACTTATAAATCCATAAAATAATTCATACTTGATCTGAGGGGTTAGAATGTACTCTTCATCGACCCGACAACCACTTACATTACAAAAAAAACTAAGCTCAAATATTTCATACTTTAAAAGGCCTCTCAAGATGCACTGATGCAGTAAGACTCTAGTAGTACAGTACATAGAAAACGTTGTCCCTAAAACGTGTCATTCTTCTCCAAACTATTGACCAGGGATGGGGTCAATTCCACTTTAAATTAAGCTGAATTTGATTAAAATGGACCCCCAACCCTGCAACTGACACTGGCTGATAAAATGTATGGATAGAAGGCAGACCATTCATATTCTAACCAGCTAACCTCAGTGCTCTCATTGTCAGAGGTAGGTATAGAGAGACTGAATGTTAAACTCTCTACTGTTCCCGTGGTGATCCCGGCATCTCATTTGGTTTACCCAGGCTAAGGTATAGACAGAGTAAATACGGGCAGAAATGCAGCAGTGTCTTTCAGTGTTGGGGTTACAGCGGtgtgagggaaggagggggttGGAGAGGTAGAGGGTAGTTTCATATAGTACAGTGTGCCTATGTTCCTCGAATCTCCCCGGGGTGAGCTCATGAGGGAACAAGGCAGCacgtgtgggagtgtgtgtattACATCGTAACAACAGAAAGCCAACGTCACTCtcccactcccacacacacactcgcaccaCAGTCCCGACGCGTACAAGACACACAGACCCCTCCAACCCTGGAGCTACGCAACACACCACAGCGCAGACTGTACAAGAATCGGTTGTGATATTTTTGACCTCATCTCTATGTTGAAGGCATTGACTGTCTGCTACTGGCACCTGTCTACCATTGAGAGAGTCAATAGCTAAACATTGTGTGGTGGTAAGATGACAGAATGTCTTCCCTTCTTTAACTGCACTGTTAGTGTGGTACCAGGACCAAGTTGGGGTTGGGTTTTTACTGTAGTCAAAGGACAACTCCTAAACTccaaacacactctcacacacacacatccccaccgccacagtacacacacatatacccacacacacagatatacacagacacacacagccgcTGAGAGTGAGGAGGGGTACGAGGGTGGTATACAGTGGTAGGCGGGGGGGAAACAGAGGAGGGGTACGAGGGAGGTGACTATCTGAAGGGGGGCTCAGGCGTGTGAAGGGAGAGTTCGGGGGCTCGGCGGAGGACGGCCTCCTTGCGGTTCGGTGGCGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU881926 True 5623 lncRNA 0.46 3 15438527 15444331

Neighbor

gene id symbol gene type direction distance location
LOC110533001 LOC106577875 coding upstream 76433 15352282 ~ 15362094 (+)
LOC118966002 NA coding upstream 90001 15342924 ~ 15348526 (+)
LOC110531573 LOC106577850 coding upstream 175884 15252465 ~ 15262643 (+)
LOC118965999 LOC106596013 coding upstream 190422 15217597 ~ 15248137 (+)
LOC118936439 LOC106596013 coding upstream 252581 15085681 ~ 15185946 (+)
LOC110531590 LOC106577858 coding downstream 26884 15471215 ~ 15505643 (+)
si:ch211-168d1.3 LOC106577859 coding downstream 79225 15523556 ~ 15561336 (+)
trnas-gcu-6 NA coding downstream 159987 15604318 ~ 15604399 (+)
nit1 nit1 coding downstream 164099 15608430 ~ 15611523 (+)
clcn3 LOC106577864 coding downstream 167244 15611575 ~ 15660094 (+)
G774016 NA non-coding upstream 57139 15379350 ~ 15381388 (+)
G773997 NA non-coding upstream 124063 15313841 ~ 15314464 (+)
G773998 NA non-coding upstream 126045 15312233 ~ 15312482 (+)
G773995 NA non-coding upstream 128375 15309695 ~ 15310152 (+)
G773994 LOC106577853 non-coding upstream 129599 15307999 ~ 15308928 (+)
G774064 NA non-coding downstream 13960 15458291 ~ 15458506 (+)
G774069 NA non-coding downstream 25064 15469395 ~ 15469681 (+)
G774071 NA non-coding downstream 26635 15470966 ~ 15471165 (+)
G774088 NA non-coding downstream 75745 15520076 ~ 15520343 (+)
G774021 NA other upstream 61339 15375224 ~ 15377188 (+)
G773983 LOC106577853 other upstream 139313 15291949 ~ 15299214 (+)
G773601 NA other upstream 1054361 14382670 ~ 14384166 (+)
G773583 NA other upstream 1112694 14306630 ~ 14328474 (+)
G774065 NA other downstream 21029 15465360 ~ 15465624 (+)
G775142 NA other downstream 421758 15866089 ~ 15866708 (+)
G775306 NA other downstream 741945 16186276 ~ 16187450 (+)
LOC110532936 LOC106577844 other downstream 793043 16233342 ~ 16250864 (+)

Expression


Co-expression Network