G774924


Basic Information

Item Value
gene id G774924
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15658774 ~ 15661855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU883008
AAAATGTTTAATCTTAACATATAGTTAAAATGTACAATCAATGTAATCATACATACAATTCTGCCTAATGACCAACTAAACAACTACCATaaaaggaaaaacatttattcGTATGAAGACAACCACAGTGCTAGAAGATGACCACCACAGGGGACGATGCGCTCTTCATCAACCGACAGCAGGTCGTATCCATTAGGGCAAGCAACGGAAAACGTTTGGCAATGGAAAATGGGTCCAGCTAGTCCCCCTCTGTCTGTTTTATTCTTTCGTTTGgtccctaatgaatatgacctagGACAGTCACTGCAATACTAAGGAACTAGAGTGAAAATCATTGGCAGCGGTAGTCATCACCTGCCCTTCCCCCTTtagaatgtgtcccaaatggcgccctctTCCCTATGAAGtgtacttcttttgaccagagtcctctgggccctggtcaaaagtagtgcactatatagggaaaagggtggcaTTATTGACACAACCCTTATCCTTCACTCAGCAGGTAAGGTGCTACTCTATGCATCGTGTCATGGAAACGAAGTAAGAGAGAAAGGGGACTCCTTTGGCTGGTGCACACATTGAGGTCACTGCTTCCTGTGTGGTGGGCCACACATTAAAGGGTGAAGCAGACATAAGATCCTATTTACAGTTTTTCATGAGTCTAGGTTTACACGTGGCTGGTTCAAAATGATTGCCTTTGGTGTGCTGTACGTTTCAACAACTCAAATATACACGTTTATTTTAAAGTTTAAAGGAGTTGGTGGCACAACTCGTGTTGTACCTTCAATTCATGCTTTTTAGAATTACATATGGTTCTGTCCCAAACgacgccctattccctatacactgagggtacaaaacattaaaCACCTCTTTCCATGATCTACAAtgaccaggtgaaagttatgatcccttattgatgacaCCTGttaaatcagtatagatgaaggggaggcgatggcttaaaaatccttcttcaaccttTGAGACATTCATTAtttatgccattcagagggtgaatggtcaaGATAAAAACTTTTACATGCCTTTTGAATGGcagatggtagtaggtgccaggcgcagcgGTTtgagtttcccgtgtgtatcaaggatggtccaccacccaaaggacatcaagccaATTTGACAActgaagtattggagtcaacatgggccagcatccctgtggaacactttcaacaacttgtagagtccacgccctgaccaattgaggctgttctgagggcaaaagggagagcaactcaatattaagatgttcctaatgtgttgtacacAGTCTataactttagaccagagccctatgggccatgTTCAagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatataggaaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtgacgccACCATGGAATGCTGGAAGTCGATTTAAAATGGTTTATATTGGTTAAAAGTGGCATGCAAAGAAAAGTATGTTGAATTGTTCTTGTTGACGACTGGGCAGAGGAGCCTTGAAAGATACATTTCTCACACCATGAAACAGCTTAATTAAGCAAAGTAAAATCTTCAAGACACGGTTACTGTGCAGTATTACCATCGACATCATCATTTATGTTGTTCACTTGGAAAGAAAAAAGTGCAGTTCTCCAGTCTTGACTTTGTCTCGTTACTTGACTGCAGATATCAATACTAAACGTAATAgcaatagtaaaaaaaaaaaacttctccAGTTAGAGTAACTCAACCTTTTAATATATTCTCTCCCCACCTTCACTGTCGGAGTGTTGCTAGGTCTCCATCCTAATGGGACATGCTCACACAGTTATTTAGTTCAACAGGGAGTAACTGATGAGTATCAGACTCTTCTGTACAACACTGCATCTGTTTTCACATACTGAACTACAACACACATCCATACACTCAGACATGAACTAACTACTACAGTACATCCTGCTTGTATCCTTGACaaccctctagctctctctccttctcacacaTTAAAGCAAATCTCCCTTGGATCGAGGCCCAGTCTAATATCAAGACAAGGGTTGTCTTTAGGGGGGTTACTATAACAACCTGAATGGAATGTTGAGGTGCTCGTGACACACACATAAGCACTCTTGATTGCTCTCACACACAGTTCCCAGGTAAACAATTATTTTGAGGATGGACGGGGTGTGAGGGAGGGACACAGTGGGGTCGGAGCCTGGCAGGGCATCTGGCAGACAGCCAATTGGCGTGTCTGAAGGTCCCTCCTTGTGTCCTAGAGTATCATTCTGACGTCTCACCCTGGCAGCCAGGCATCAGGCTCACAGCAATGTCTGCTAGTATAAACCAATAGGAATAGGACATGGGTGGAGGAGCatgaaggtgtgtgtgcgtgtgtgtgtgtaggaggtcAAATTGGTCAAGTGTGTGCTCTTGTCTGGCATCTGTGTTTGTATGAGTGAGTGTGAgctcctgtatgtgtgtgtgtgtgtgtgtgtgttaaaagtgTGTTGCTTGGGTATATATGTCCCAGTCCGTAGTAGCTGCGACTTTGTGGCCGGAACATCCTTCAAAAACAGCCATTTAATATCCCTTTAATCTGGCCGTCTCTACCTTCCTGTGGCCACTAGGGCTCTGTGGGAGGGTCCCTAGGCACTAGGGCTCTCAGTCACTATGGTTAGGGACAGGGTTccatggggtggggggggctgtttgtCATAGAGAGGAGCCTCGACCCTCCAGTAGGTGCACAAcctcctcctcgctctcctcctcatcatcgtgACGACCTGGGAAGGAGGTGACTAGTTGAACATTATGTTGTCGGGGTCTTGGTTGGTCAACTGGGCCATATGACGAAGGATATCTTTTTTTGTGATAATACCAAGGAGAC

Function

NR:

description
H(+)/Cl(-) exchange transporter 3 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU883008 True 3059 lncRNA 0.44 2 15658774 15661855

Neighbor

gene id symbol gene type direction distance location
LOC110531598 pfdn2 coding downstream 50121 15605030 ~ 15608653 (-)
b4gat1 b4gat1 coding downstream 58823 15595134 ~ 15599951 (-)
LOC110531593 LOC106577861 coding downstream 80060 15569635 ~ 15578714 (-)
LOC110531592 LOC106577860 coding downstream 89282 15553474 ~ 15569492 (-)
LOC110531589 ccs coding downstream 196421 15454410 ~ 15462353 (-)
mfap3l mfa3l coding upstream 4635 15666490 ~ 15678852 (-)
LOC118966163 aadat coding upstream 22784 15684639 ~ 15688747 (-)
intu LOC106577868 coding upstream 35967 15697822 ~ 15740853 (-)
LOC118966198 NA coding upstream 81487 15743342 ~ 15743550 (-)
LOC110531603 groa coding upstream 120054 15781909 ~ 15787666 (-)
G774933 NA non-coding downstream 4368 15651030 ~ 15654406 (-)
G774960 NA non-coding downstream 23552 15634436 ~ 15635222 (-)
G774957 NA non-coding downstream 25347 15629043 ~ 15633427 (-)
G774959 NA non-coding downstream 26993 15630103 ~ 15631781 (-)
G774952 NA non-coding downstream 36476 15622075 ~ 15622298 (-)
G774983 NA non-coding upstream 29624 15691479 ~ 15691679 (-)
G774989 NA non-coding upstream 49591 15711446 ~ 15713654 (-)
G775003 NA non-coding upstream 66830 15728685 ~ 15732759 (-)
G775028 NA non-coding upstream 111712 15773567 ~ 15773801 (-)
G775042 NA non-coding upstream 114231 15776086 ~ 15776434 (-)
G774954 NA other downstream 32854 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 297455 15352307 ~ 15361319 (-)
G774562 LOC106577809 other downstream 404801 15238058 ~ 15253973 (-)
G774427 LOC106578022 other downstream 934252 14724054 ~ 14724522 (-)
LOC118966145 LOC106599223 other downstream 1404617 14249401 ~ 14254157 (-)
G775139 NA other upstream 200465 15862320 ~ 15863834 (-)
G775532 NA other upstream 250981 15912836 ~ 15913294 (-)
LOC110531626 LOC106608856 other upstream 1165198 16827053 ~ 16828583 (-)
G776294 NA other upstream 1203612 16865467 ~ 16866034 (-)

Expression


Co-expression Network