XLOC_026955


Basic Information

Item Value
gene id XLOC_026955
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 703099 ~ 720805 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057494
tccgggaTGATCCCGAGACGCTCCCAGACCAGCCGAGAGACAGAAGTGATGAAGAGGGAAGTAGATGTTGTCGCTGACATGGATGGGAGAGCAGCTGAGGTGCACCCACAGCCCTGGAGGGCAGGGTGGAGGAGCAGGAGAGGGAAATGAAGGCTGGTTTATACCTCTGCGTCAAGTGATGGGCGTGAGCCATGGTGCAAGCCTTTGAATCTGGATGATTTTGAACTCTACAACAAGCAGCTCAAACAAGTAAAGAAGACCTTGCTAAAAGTGCTTCATCAGCTCTACAAGCATCTCACCCCGGGACTGCTCCAGTAGATTTGCTGCCATTTACGTCTTCTGGGATGTACACATCGCTCTCCCACTGCTTGACCTAATGCATATACAAAAGATACAATAAAACTTCAATTAAACATCCATTGGACTTTTAATATACATTACCTTTCACTCTTCAAACATTCTTATTAAGGcaaacatacaaatacaaaaatacagtctTTACAGTGAACCTACAACACAACACATCTACAAATGATGTGTCATTTAACCTGCCTTCTGCATTAATAAACTGATATTTACTATAAAAGATAGGCATAATAACTCAAC
>TCONS_00057495
TGATCCCGAGACGCTCCCAGACCAGCCGAGAGACAGAAGTGATGAAGAGGGAAGTAGATGTTGTCGCTGACATGGATGGGAGAGCAGCTGAGGTGCACCCACAGCCCTGGAGGGCAGGGTGGAGGAGCAGGAGAGGTGAATCTGGATGATTTTGAACTCTACAACAAGCAGCTCAAACAAGTAAAGAAGACCTTGCTAAAAGTGCTTCATCAGCTCTACAAGCATCTCACCCCGGGACTGCTCCAGTAGATTTGCTGCCATTTACGTCTTCTGGGATGTACACATCGCTCTCCCACTGCTTGACCTAATGCATATACAAAAGATACAATAAAACTTCAATTAAACATCCATTGGACTTTTAATATACATTACCTTTCACTCTTCAAACATTCTTATTAAGGcaaacatacaaatacaaaaatacagtctTTACAGTGAACCTACAACACAACACATCTACAAATGATGTGTCATTTAACCTGCCTTCTGCATTAATAAACTGATATTTACTATAAAAGATAGGCATAATAACTCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057494 False 606 lncRNA 0.43 4 703099 720805
TCONS_00057495 True 537 lncRNA 0.42 3 703106 720805

Neighbor

gene id symbol gene type direction distance location
XLOC_026954 fbxo7 coding upstream 2402 686157 ~ 700697 (+)
XLOC_026953 CU855889.1 coding upstream 19634 681501 ~ 683465 (+)
XLOC_026952 xpot coding upstream 27672 646154 ~ 675427 (+)
XLOC_026951 pthlha coding upstream 76549 612363 ~ 626550 (+)
XLOC_026950 NA coding upstream 116023 577850 ~ 587076 (+)
XLOC_026956 ost4 coding downstream 15590 736395 ~ 737520 (+)
XLOC_026957 NA coding downstream 23059 743864 ~ 747292 (+)
XLOC_026958 NA coding downstream 58664 779469 ~ 800589 (+)
XLOC_026959 NA coding downstream 121175 841980 ~ 845249 (+)
XLOC_026960 BX649468.1 coding downstream 172154 892959 ~ 928212 (+)
XLOC_026949 AL845512.1 non-coding upstream 148715 554267 ~ 554384 (+)
XLOC_026947 BX890562.2 non-coding upstream 203153 402626 ~ 499946 (+)
XLOC_026962 NA non-coding downstream 220841 941646 ~ 943901 (+)
XLOC_026964 NA non-coding downstream 366725 1087530 ~ 1090187 (+)
XLOC_026948 BX890562.4 non-coding upstream 283325 419659 ~ 419774 (+)

Expression


Co-expression Network