G775129


Basic Information

Item Value
gene id G775129
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15860469 ~ 15863832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU883246
ATTTAAACgaaactaaacaaaataacaacacaaacgtgaagctatacacaCAAGTGCTGACagagacaataacccacaaaaccaacatagaaatggcaacctaaataggatccccaatcagagacaacgataaacagctgcctctgattaggaACCAATTCAGTTCACCATAGACCTAAATTTACCTAGACATaacaaaaccccatagatatacaaaaaaccctagacaggacaaaaacacacataccaccctcgtcacaccctgacctaaccaaaataataaagaaaacaaagataactaaggtcagggcttgacagtgtccctgcctttgacaaagtgggaACTACTTATCATAGGGCGGCATCAGTGCTCACCTAAAAAGCCTATTTTTCAGCTTtctgaaaattaaatatttgtcATCCATCCCAGACTTCTAAAAAAAGAAACTCAGGTGATAGCCATCTAAACCTGGTTCCTCTAGTCAAGGACTCCATAGTCTAGAAGTCAGTATCCTCTCCTCAAATGACAGAACGTGAACGTAAAACTGAATTAGATTTTTATGATGGATATTCCACAGGGAGCTACAATCTGGTCAGCTGTGTCTAAAGGTTGCCTGTTATGAGGTAGGATTGGCATGGCTTTTGAAAATGTAATGTGTCTGCATGTTCCAAaatgaaatctctctctctctctctctctctacatatataGTTTTGTTCAGATTTCCCTCTGGGATGGTCCTCGTAGACATCATACATCCTTTCCATTAGAGTTTGAACTCAACTAGCACTgaagtatgtaaacaaagtatgTTTAGCTTGTCAGTGTTCCATGCAGGTGTTGGCTGTGTTTCATCCCAGGAAAATCTTCACTTCACTATGCCCTCGTTCTTCACTCCACTTCACAGATCTGAGACAACCTGCCACATTGTTTTGGCATATCCAGTCTGTGAAGAGGAGGTGATGAAAGCATAAGGGAGGGAATATCTTCCTGGAATGAAACACAGCCATagtctcttttgttctctctgtAGAACCCCGTAATTACATGACTTGTCATGCAGTACCACTGACCGTGTTCACATGACAGCCATAAAACCAAACAGAATGGTTAGAGTTGTGTGATAAAATTTAGTTTATAGCTGTTGAGATGAAATACGCTTGAGATTAAATGCTGGAAGATGTTGTATGGAACATTTTCAAAGTATCTATAGTACATTAAACATGTATTAAACCTATTGAGTTAAATGTTTTTATGAAGAGTAAACACTAGGAAAAtctattttcatccatatcaaaTAATTGTAAAAATCTTTGTCTGCATTCAACATCAGTCGAAGGATAGAGGGAATCCACTAGAACTTTCTTGCAGATCTGGTAGGATGAAAAatccatgtctctgtgtccaaTTCACCCCTGggtcgacacacacacaaagacatgcttgtttttgtttacattttagcagacactcttttaCAGAATGACTTCCTTAAGTTACTTCCTCAAGAGAAAATCTGTTTTTCACCTAGTCGTCTCTGGGATtctaaccagcaaccttttggttactggcccaatgcttttaAGCCTCCTGCTGTCTCTACATTGTAATTATCACACACATTACATCTTCTTAAACACAATAATGCTCGACTGCATATAGTACCAAATAATGGTTATTTGGCTTGGAGCCATAGTGGATCCCTTTAAAAATAGAACTAACTATACAGTAGTGAATCTACATGCAAAAGTGAAATTGGTGTATTTATGCTGTTTTTCAAATGCACATATCACATTATACATCTTCCCAAACAAACAACCGGTAGTTTGAAAACTTTACATAATACTTTACATACTTACTATTAGTGGGCATTTCTTCAGCTGCTGTCAACTTGTCTTGTGTTTGCTTCAACGTTTCTTGTGTTTGCTTCAACGTTTCTTTTGTTTGCTTCAACTCTTCTTTTGTTTGCTTCAACTCTTCTTTTGTTTGCTTCAACTCTTCTTTTGTTTGCTTCAACTCTTCTTTTGTTTGCTTCGACTCTTCTTTTGTTTGCTTCAACTCTTCTTTTGTTTGCTTCAACTCTTTTGTTTGCTTCAACTCTTCTTTTGTTTCtttgtcctcttctgtctgtttcTTTACTTTGGGACTTAACTGATCAATTTGAGCCTGTAATTCTTGTATTTCTTCAGTCTTCTGTTTAATGATCTTCTCCAGTTTTTCTATCTTAATCTCAATGGATTCACATTTTTTCTTATTCTTCTTATAGCTTGGCAGATGTAATTTAAGTTGGTTGTACTTCTTTTCAAGGTTTTTTTTCAGAGATGTctttttcttcagtttattctCTGTGGCAATATCTTCCATGTTGAAATTCTCATTTTTGTTCTCAGCTATATTTACCTCTAAATTGTAGATCAGCTCCCTACTCTGAACCTTCCATGAATTTATGTCGGAAAGACAAAAATACCTTCCTTCACATTTCTCTATCAACCAGTCAAGTTTAAGTTTAGTAATGTATTCGTCAATAGGCATATTTTCTTTCATCAATCCTTTCTCATTTGTGAACAGCACTATTATATTTTCCCATACATTTTCAGTGAACATTTCTTCAAACATGCTTTTTCCTTCTTCATTTGTGAAAATAGCTAGAGAGTCTGTACAACCGATTTTAATAACCAAGAGGAGAGC

Function

NR:

description
immune-associated nucleotide-binding protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU883246 True 2689 lncRNA 0.37 3 15860469 15863832

Neighbor

gene id symbol gene type direction distance location
ino80b znhi4 coding upstream 162646 15692085 ~ 15697823 (+)
clcn3 LOC106577864 coding upstream 200375 15611575 ~ 15660094 (+)
nit1 nit1 coding upstream 248946 15608430 ~ 15611523 (+)
trnas-gcu-6 NA coding upstream 256070 15604318 ~ 15604399 (+)
si:ch211-168d1.3 LOC106577859 coding upstream 299133 15523556 ~ 15561336 (+)
trnav-uac-14 NA coding downstream 257132 16120964 ~ 16121036 (+)
trnav-uac-15 NA coding downstream 265898 16129730 ~ 16129802 (+)
trnak-cuu-3 NA coding downstream 268972 16132804 ~ 16132876 (+)
trnan-guu-4 NA coding downstream 270465 16134297 ~ 16134370 (+)
trnan-guu-5 NA coding downstream 279668 16143500 ~ 16143573 (+)
G775128 NA non-coding upstream 340 15859889 ~ 15860129 (+)
G775123 NA non-coding upstream 4307 15853264 ~ 15856162 (+)
G775121 NA non-coding upstream 10724 15847653 ~ 15849745 (+)
G775114 NA non-coding upstream 19188 15841055 ~ 15841281 (+)
G775085 NA non-coding upstream 30341 15829705 ~ 15830128 (+)
G775140 NA non-coding downstream 406 15864238 ~ 15864439 (+)
G775143 NA non-coding downstream 4075 15867907 ~ 15868816 (+)
G775145 NA non-coding downstream 6740 15870572 ~ 15871102 (+)
G775147 LOC106577836 non-coding downstream 9323 15873155 ~ 15873429 (+)
G775149 NA non-coding downstream 12742 15876574 ~ 15876901 (+)
LOC110531590 LOC106577858 other upstream 359393 15471215 ~ 15505643 (+)
G774065 NA other upstream 394845 15465360 ~ 15465624 (+)
G774021 NA other upstream 483281 15375224 ~ 15377188 (+)
G773983 LOC106577853 other upstream 561255 15291949 ~ 15299214 (+)
G773601 NA other upstream 1476303 14382670 ~ 14384166 (+)
G775142 NA other downstream 2257 15866089 ~ 15866708 (+)
G775306 NA other downstream 322444 16186276 ~ 16187450 (+)
LOC110532936 LOC106577844 other downstream 373542 16233342 ~ 16250864 (+)
LOC110532939 NA other downstream 475862 16315734 ~ 16342810 (+)
G775945 NA other downstream 819362 16683194 ~ 16683491 (+)

Expression


Co-expression Network