G775650


Basic Information

Item Value
gene id G775650
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16128793 ~ 16129615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU883867
TCTGAATAAGAGCAAAACAGTGCAACACTACAAACTACGAAGAGGAAGCTCAGTCAACCTTATTCGTCGTTCCTGTGAAGAATAAGTCAACACGTTACTTATTGTTACTGTATATGCTATCATGGCTGAAGAAAGCAGAATATATAACATTCATATTTATCTTTATGTCAACACTAAGTGAGATAAGATACAAGACACCATCATTATTTTATAGCGGCATCACTGACCTAACAGTATATAAGCTTCTACTTGATCATAACCAATTATGTATAATAGTGGGTCCCAACCAGGGGTAAATTGGTTTTGCATTAAACAACATTTTCAGCCAtgaccttgtctgaaggacaaatggataaacaggttaatgtcaagccctgcattaAACGTAGGCCTACAttaaacaccacacattggctgctacagTAGGCTGAAAGATAGAACAGCTATTTTCCATGTTAAAATTTTatggatgcattttctccattgtttttgatggtaggccactctggtaggcctacattatggtCAAATAGCCACTGTTAAAAACAAGATAAAGTGGGTACTgcatcagtgttcacagtaaatgcaCACCAGAAGTTTGCACAGAACTTTCACAGcattcaagtttgcgctcagcagacctgaaaacTGCCTCAGTgctgaaaaaaaaacattaaacacTACAAGCCATTACCACAGAGTTGTAACAAACACACAAATAACTTTTCATGTAATATTTTGTGTCATTTTATGAATGTCAATTTGCTTTTAAAAATAAAAC
>TU883870
ATGCTGATGTTGACTTGGTGATGTCTTGTCTGCAGGGGAAATTCTGAATAAGAGCAAAACAGTGCAACACTACAAACTACGAAGAGGAAGCTCAGTCAACCTTATTCGTCGTTCCTGTGAAGAATAAGTCAACACGTTACTTATTGTTACTGTATATGCTATCATGGCTGAAGAAAGCAGAATATATAACATTCATATTTATCTTTATGTCAACACTAAGTGAGATAAGATACAAGACACCATCATTATTTTATAGCGGCATCACTGACCTAACAGTATATAAGCTTCTACTTGATCATAACCAATTATGTATAATAGTGGGTCCCAACCAGGGGTAAATTGGTTTTGCATTAAACAACATTTTCAGCCAtgaccttgtctgaaggacaaatggataaacaggttaatgtcaagccctgcattaAACGTAGGCCTACAttaaacaccacacattggctgctacagTAGGCTGAAAGATAGAACAGCTATTTTCCATGTTAAAATTTTatggatgcattttctccattgtttttgatggtaggccactctggtaggcctacattatggtCAAATAGCCACTGTTAAAAACAAGATAAAGTGGGTACTgcatcagtgttcacagtaaatgcaCACCAGAAGTTTGCACAGAACTTTCACAGcattcaagtttgcgctcagcagacctgaaaacTGCCTCAGTgctgaaaaaaaaacattaaacacTACAAGCCATTACCACAGAGTTGTAACAAACACACAAATAACTTTTCATGTAATATTTTGTGTCATTTTATGAATGTCAATTTGCTTTTAAAAATAAAAC
>TU883868
TCTGAATAAGAGCAAAACAGTGCAACACTACAAACTACGAAGAGGAAGCTCAGTCAACCTTATTCGTCGTTCCTGTGAAGAATAAGTCAACACGTTACTTATTGTTACTGTATATGCTATCATGGCTGAAGAAAGCAGAATATATAACATTCATATTTATCTTTATGTCAACACTAAGTGAGATAAGATACAAGACACCATCATTATTTTATAGCGGCATCACTGACCTAACAGTATATAAGCTTCTACTTGATCATAACCAATTATGTATAATAGTGGGTCCCAACCAGGGGTAAATTGGTTTTGCATTAAACAACATTTTCAGCCAtgaccttgtctgaaggacaaatggataaacaggttaatgtcaagccctgcattaAACGTAGGCCTACAttaaacaccacacattggctgctacagTAGGCTGAAAGATAGAACAGCTATTTTCCATGTTAAAATTTTatggatgcattttctccattgtttttgatggtaggccactctggtaggcctacattatggtCAAATAGCCACTGTTAAAAACAAGATAAAGTGGGTACTgcatcagtgttcacagtaaatgcaCACCAGAAGTTTGCACAGAACTTTCACAGcattcaagtttgcgctcagcagacctgaaaacTGCCTCAGTgctgaaaaaaaaacattaaacacTACAAGCCATTACCACAGAGTTGTAACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU883867 False 781 lncRNA 0.36 1 16128793 16129573
TU883870 False 823 lncRNA 0.37 1 16128793 16129615
TU883868 True 709 lncRNA 0.38 1 16128865 16129573

Neighbor

gene id symbol gene type direction distance location
LOC110531612 LOC106577840 coding downstream 10884 16095962 ~ 16117909 (-)
LOC110531611 LOC106577839 coding downstream 41763 16048744 ~ 16087030 (-)
LOC110531610 LOC106577838 coding downstream 98895 15991941 ~ 16029898 (-)
trnal-cag-5 NA coding downstream 115175 16013536 ~ 16013618 (-)
LOC110531609 LOC106577837 coding downstream 148992 15951928 ~ 15979801 (-)
trnak-cuu-4 NA coding upstream 3430 16133045 ~ 16133117 (-)
trnan-guu-3 NA coding upstream 3990 16133605 ~ 16133678 (-)
gba2 gba2 coding upstream 56642 16186257 ~ 16220121 (-)
LOC118966005 msmp coding upstream 101043 16230658 ~ 16232360 (-)
LOC110531616 tesk1 coding upstream 133849 16263464 ~ 16289868 (-)
G775645 NA non-coding downstream 865 16120267 ~ 16127928 (-)
G775612 NA non-coding downstream 62947 16063926 ~ 16065846 (-)
G775603 NA non-coding downstream 81500 16045612 ~ 16047293 (-)
G775602 NA non-coding downstream 85001 16043489 ~ 16043792 (-)
G775600 NA non-coding downstream 86050 16042380 ~ 16042743 (-)
G775651 NA non-coding upstream 1134 16130749 ~ 16131239 (-)
G775653 NA non-coding upstream 2694 16132309 ~ 16132581 (-)
G775656 NA non-coding upstream 7957 16137572 ~ 16137787 (-)
G775657 NA non-coding upstream 20517 16150132 ~ 16150613 (-)
G775668 NA non-coding upstream 59581 16189196 ~ 16189952 (-)
G775532 NA other downstream 215499 15912836 ~ 15913294 (-)
G775139 NA other downstream 264959 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 341187 15781909 ~ 15787666 (-)
G774954 NA other downstream 502873 15625202 ~ 15625920 (-)
G774702 LOC106577875 other downstream 767474 15352307 ~ 15361319 (-)
LOC110531626 LOC106608856 other upstream 697438 16827053 ~ 16828583 (-)
G776294 NA other upstream 735852 16865467 ~ 16866034 (-)
G776340 LOC106577790 other upstream 880397 17010012 ~ 17014685 (-)
G776355 NA other upstream 895765 17025380 ~ 17025813 (-)
G776461 NA other upstream 1115819 17245434 ~ 17245797 (-)

Expression


Co-expression Network