XLOC_026964


Basic Information

Item Value
gene id XLOC_026964
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1087530 ~ 1090187 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057109
taattttaaactgctttataTAGGAAGGGGTTcattttacctggtttctgaaaCCTTCCTTCACTGGACTTAAACACCAATCCCACTGCACTCCAAGTCAGACGTCTGATACCGTACCTGGCGATCTGCagattttacacacaaaatgcagccatatgcacCTCAGTCAGACGTCTGATACTGTACCTGGCGATCTGCagattttacacacaaaatgcagccatatgcacCTCAGTCACATATTTCTCGGTtcccaaaaatgtagccctgggtaCATATTCCCCATGCTCCTTTGTTGGTACAAAATAATGCCTTGTTTTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057109 True 323 lncRNA 0.43 2 1087530 1090187

Neighbor

gene id symbol gene type direction distance location
XLOC_026963 rpap3 coding upstream 104288 966061 ~ 983242 (+)
XLOC_026962 NA coding upstream 143629 941646 ~ 943901 (+)
XLOC_026960 BX649468.1 coding upstream 159318 892959 ~ 928212 (+)
XLOC_026961 ripply2 coding upstream 172792 912563 ~ 914738 (+)
XLOC_026959 NA coding upstream 242281 841980 ~ 845249 (+)
XLOC_026965 chrm2a coding downstream 56159 1146346 ~ 1284672 (+)
XLOC_026966 CR548631.1 coding downstream 101340 1191527 ~ 1191644 (+)
XLOC_026967 NA coding downstream 310125 1400312 ~ 1412133 (+)
XLOC_026968 NA coding downstream 315416 1405603 ~ 1408041 (+)
XLOC_026969 NA coding downstream 356868 1447055 ~ 1451055 (+)
XLOC_026958 NA non-coding upstream 286941 779469 ~ 800589 (+)
XLOC_026957 NA non-coding upstream 340238 743864 ~ 747292 (+)
XLOC_026955 NA non-coding upstream 366725 703099 ~ 720805 (+)
XLOC_026972 NA non-coding downstream 486663 1576850 ~ 1593812 (+)

Expression


Co-expression Network