XLOC_026967


Basic Information

Item Value
gene id XLOC_026967
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1400312 ~ 1412133 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057499
ACACAGCTGACTGTGTCCTCAGAGAGATCACTGCTGGTGCTGATGGCAGGTTGATCAGTGCTGCTGCAGGTTCTTGTTCTTcagctgatgatgatgttgttCTTCCTCCTGCTGTTTTTCCTCTGGAGTGTGTCTGCATGTGCCGAGGCCGGCGtccgtctgtctgtgtgtgtgctcggTGTTCAGAAGGCAGAAAAGCGGACACACACACTGGTGAAGCAGGCATCTGACAGAGAGTGTGTTGAAGAGTCATTCAGAACCGGCTGGTTTTCTGCGGATGTGTTAATGTTTGACATGCTGCCCGACTGCATTCTTGCCTTTACTACAGGATGGTTTCTGTGAGCTCAGTG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057499 True 350 lncRNA 0.51 2 1400312 1412133

Neighbor

gene id symbol gene type direction distance location
XLOC_026965 chrm2a coding upstream 115640 1146346 ~ 1284672 (+)
XLOC_026966 CR548631.1 coding upstream 208668 1191527 ~ 1191644 (+)
XLOC_026964 NA coding upstream 310125 1087530 ~ 1090187 (+)
XLOC_026963 rpap3 coding upstream 417070 966061 ~ 983242 (+)
XLOC_026962 NA coding upstream 456411 941646 ~ 943901 (+)
XLOC_026969 NA coding downstream 34922 1447055 ~ 1451055 (+)
XLOC_026970 trim35-14 coding downstream 48946 1461079 ~ 1466395 (+)
XLOC_026971 slc38a4 coding downstream 104583 1516716 ~ 1566572 (+)
XLOC_026972 NA coding downstream 164717 1576850 ~ 1593812 (+)
XLOC_026973 slc38a2 coding downstream 187901 1600034 ~ 1617897 (+)
XLOC_026959 NA non-coding upstream 555063 841980 ~ 845249 (+)
XLOC_026958 NA non-coding upstream 599723 779469 ~ 800589 (+)
XLOC_026975 NA non-coding downstream 271895 1684028 ~ 1685509 (+)
XLOC_026976 NA non-coding downstream 274353 1686486 ~ 1689357 (+)
XLOC_026978 NA non-coding downstream 320694 1732827 ~ 1735224 (+)

Expression


Co-expression Network