G775953 (LOC106674859)


Basic Information

Item Value
gene id G775953
gene name LOC106674859
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16693396 ~ 16694150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU884231
ATTCCAGATACATCTTCGATCTTACTTACACAGTCGTCCAGCAGGGGAAAGTTTGCGAAGTTATTGTTCTCTGTTCGTCGTTTCCATAACGGTAGCTTTTTTTGAAAAGCCTTCAGGTTTTCCTCCGCTTCGATGATGTTGACTCCACCGCCCTGCATCTTTTGATTGAGATGATTGAGAGCTGCGAAGATATCGGCCATGTACGCTAAAATGAGAATGAACTCAGAATTTTTGAAGCAATCTGCATGACAATGTTGGTGCTCTTGCAAAAACAGGGCTAATTCCACACGCACGGCAAAAACACGATTCAGCACCTGTCCCCGGGATAACCACCTAACGTTAGAATGGTACAGAAGTACCTCGAATTCAGAGCCcatttctttacacagctcactgaagaTGCGATACCGCAGAGCACTAGTTCGCACATAGTTCACGCATTCCACTACAATTTTTAATACTTCTGCCAGTTTTGGAGGCAAGGTTTTTGTTGCCAACGcatgcctgtgcagaatacaatgcgtaacaatgatgtgtggtgcatcggctttcactagcgcaccaaaaccagactttcttcccagcatgactggagctccgtccgaacaaactgcagaaaccatatcccacgaaagattgttgtctttgaagaagtcatccacaagtttcttcacatcggctgccttagttgttgttgtaagaggcttacaaaataaaaatTCTTCCTTTATCACGTCGTCTTTCACATAGCGCAC

Function

NR:

description
protein ZBED8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU884231 True 755 lncRNA 0.44 1 16693396 16694150
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531622 LOC106577817 coding upstream 99791 16589215 ~ 16593605 (+)
LOC110531621 LOC106577824 coding upstream 105011 16582409 ~ 16588385 (+)
LOC110531620 LOC106577818 coding upstream 219996 16454905 ~ 16473400 (+)
LOC110533002 LOC106577819 coding upstream 249382 16440652 ~ 16444014 (+)
LOC110531617 NA coding upstream 313819 16366488 ~ 16379577 (+)
LOC110531623 LOC106577803 coding downstream 83384 16777534 ~ 16821342 (+)
LOC110531624 LOC106577801 coding downstream 134636 16828786 ~ 16839453 (+)
LOC110531630 NA coding downstream 198193 16892343 ~ 16907677 (+)
LOC110531629 LOC106577796 coding downstream 219920 16914070 ~ 16925975 (+)
acin1b LOC106577794 coding downstream 232062 16926212 ~ 16953584 (+)
G775942 NA non-coding upstream 12278 16680553 ~ 16681118 (+)
G775938 NA non-coding upstream 22370 16670603 ~ 16671026 (+)
G775937 NA non-coding upstream 23774 16669269 ~ 16669622 (+)
G775935 NA non-coding upstream 29703 16662811 ~ 16663693 (+)
G775934 NA non-coding upstream 31986 16660587 ~ 16661410 (+)
G776009 NA non-coding downstream 85560 16779710 ~ 16780105 (+)
G776015 NA non-coding downstream 128481 16822631 ~ 16822832 (+)
G776016 NA non-coding downstream 128715 16822865 ~ 16823073 (+)
G776017 NA non-coding downstream 129988 16824138 ~ 16824345 (+)
G776020 NA non-coding downstream 149474 16843624 ~ 16843838 (+)
G775945 NA other upstream 9905 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 350586 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 442532 16233342 ~ 16250864 (+)
G775306 NA other upstream 505946 16186276 ~ 16187450 (+)
G775142 NA other upstream 826688 15866089 ~ 15866708 (+)
LOC110532942 LOC106577806 other downstream 602905 17292470 ~ 17305629 (+)
G776487 NA other downstream 686475 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 964047 17658197 ~ 17659145 (+)
G777111 NA other downstream 1307739 18001889 ~ 18002182 (+)
G777113 NA other downstream 1309117 18003267 ~ 18005668 (+)

Expression

G775953(LOC106674859) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G775953(LOC106674859) Expression in each Bioproject

Bar chart with 20 bars.
G775953(LOC106674859) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network