XLOC_026970 (trim35-14)


Basic Information

Item Value
gene id XLOC_026970
gene name trim35-14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1461079 ~ 1466395 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053235
CAATACTGGTTAAAATCCCTGTGTGACTATGCAATTATACATTTATACCAATTATACTTTTATCAGGCAAAGAAGCATATATGTTAACCTAATTGGCATTGATTAccaatttttttaaagtcattaaagTTCAAATGCCTTGTTATAACTCCCCCAAGTAACACTCCAGGGTTTTTCCAATAAGTGTTTCAACAAGTGCCCTATAAAAggttaaaataacagtaaactaAATTAAGCAAAAACTAATTGCAAACTAACTAGTAGTTAATGTAATGTATAACTTATGCAACAATTTAGTAATTATTAAAGCTCTGTGCAACGTCCTAGTTGTCAAATGACCTTGTGGAGAAAGGAGTTGCTTAGTTATGCTTTCAGCGAAGTGAAAGTAAAGGGAAGAAACGAAAGTGTTGGGTATAGTGTAGGTTTCACAGTATCTTCAACAGTCGAGTGTCTCCACTGGGGATTGTTTACAGTCATGGCAGATGCTCTGTCTTTTTTGGAAGAGGATTTGTCATGCCTCATCTGCTGTGATGTCTTTACTGATCCAGTCACTCTGAAATGTAGCCACAGTTTGTGTGAGAATTGTCTCAAGAGTTTCTGGAAGACTCAAGATGTGCTGCAGTGTCCAGTCTGTCGGAAGGAATGCTCACCTGACGAGCCCACCAAGAGCCTGGCATTCAGAGCACTCTGCGAGTCCTTCAAGACGAGAAAACCCACAGCTGTTTCAGGAGACGTCTGTCCACAGCATAAGGAGACACTCAAACTCTTCTGCTTTGAGGACAAGCAGCCCATCTGTGTGGTCTGTTACACTTCAAAAAAGCATGAAAATCACAAGTGCTCCCCTGTCGAGGAGGCTGCTGGGAATTTAAAGGCGGATCTTAAGATGCAAATGGACAAGCTGCAGGTGACGCTTGATGACCTCAAGAAAACACATGAGAGCTGCATGGAACAGGCTGAAAATATAATGGAAAAAGAAGAAATCCAAATCAAGAAAGAATTTGAGAAGCTGCATCAGTTTCTCAAAGACGAGGAGGACAAATGGATCAAAGCATTGAAGAAACAAATAAAACCTCAAGATGGGAAATTTAAAGCCAGAATCAAGCATCTGTCCACACAGATAACAGATCTCTCTGAGAGGATGGCAGCCCTCTGGCAGGACATGGAAGCTGAAAACATCCCATTTCTCCAGAATTACAGCGATACATTACAAAAACTCAAACACTCTTCGGTAGAAAAGAGACCCGCTGAAGCAGAGAAATATCAACACCATTCTCCTCAGACAATGATCTTCACCACCTGGGCTAGAATGCAGAACCTTGTGGAGCAGCCTCCTGTGATTCTGGACCCGAACACAGCTTCCAGTAAGCAGTGGGTGTCAGCGGATTGCACAAGTGTTCAGTATGTCCTAAAGAAAGTGCACATGTGTGATAACCCAAAAAGGCTGTTTTTGGGAGTGCTGGCTTCACAAGGCTTCAATTCAGGTCTGCACTGCTGGGACGTAGAAGTAAGAGACAACAACCACTGGACACTGGGTGTAGTGGGTGAAACTGTGTATCGTAAAAGACTTTACAGAATGGATCCGAAGAGTCGTTTTTGGTGTTTTCGCTTTGTGGATGGCAAATTCAAGAAAGGTAACAATCCTGGCAAAGCAATCGATGAGAATAAGAGGCCAAATATCATCCGGGTTCAGTTGGACTTTGAGAAAGGAGAATTGAGATTCATTGACCCCTTCAGAAATAAAAATCTGTGCACCTTCACAGGTGGATTTCCGGAGAGAGTTTTCCCATATTTTTGTAGTGGAGATTTGGCAACACCACTGAATATATTCCCAGCAAATAAGGAAAAATTTTAAAACCACAACCAACATCATTTAATTTCATATGTTATAAGTATGATAGGACAGtaaatcatatcacattttaataaaaaagagcTGGATCAAATGTGATGTCCTTATAAGTTTAAGTGTCAGGTCTTAATTATTTCAATAGCGCTTTCAcgatgtagactgtgtcaaagcggaagaaaatttattttaaaaatgtcatgcGAAATGTAGCTTATTAGGCATTTCGATTAATCATGCAGTATTTCAATATATTCAGTGCAGCCTTTACTATAAGGcagattgtaatgtaataattaCCTGTGTAAGGAACAATAAAGACCTCTTTGTTGTATCAATGATGTGATATTATTGGATTTTATTCATGTATAGTGGAGGATGACACATACCTGCTCTGATGAAACTCTCAG

Function

symbol description
trim35-14 Predicted to enable zinc ion binding activity. Orthologous to human TRIM35 (tripartite motif containing 35).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110920-6 Predicted to enable zinc ion binding activity. Orthologous to human TRIM35 (tripartite motif containing 35).

Ensembl:

ensembl_id ENSDARG00000025601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053235 True 2256 mRNA 0.40 6 1461079 1466395

Neighbor

gene id symbol gene type direction distance location
XLOC_026969 NA coding upstream 10024 1447055 ~ 1451055 (+)
XLOC_026967 NA coding upstream 48946 1400312 ~ 1412133 (+)
XLOC_026968 NA coding upstream 53038 1405603 ~ 1408041 (+)
XLOC_026965 chrm2a coding upstream 176407 1146346 ~ 1284672 (+)
XLOC_026966 CR548631.1 coding upstream 269435 1191527 ~ 1191644 (+)
XLOC_026971 slc38a4 coding downstream 50321 1516716 ~ 1566572 (+)
XLOC_026972 NA coding downstream 110455 1576850 ~ 1593812 (+)
XLOC_026973 slc38a2 coding downstream 133639 1600034 ~ 1617897 (+)
XLOC_026974 scaf11 coding downstream 153189 1619584 ~ 1643101 (+)
XLOC_026975 NA coding downstream 217633 1684028 ~ 1685509 (+)
XLOC_026964 NA non-coding upstream 370892 1087530 ~ 1090187 (+)
XLOC_026976 NA non-coding downstream 220091 1686486 ~ 1689357 (+)
XLOC_026978 NA non-coding downstream 266432 1732827 ~ 1735224 (+)
XLOC_026981 NA non-coding downstream 359208 1825603 ~ 1827105 (+)

Expression


Co-expression Network