G776002 (LOC106577800)


Basic Information

Item Value
gene id G776002
gene name LOC106577800
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16871108 ~ 16877304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU884289
TAGCAGAAAATAAGAGAACTGAAGGGACCACCCTGGAGGAACTTGTGGCAGACTTGTAGTTTGTATGTGTTTGTTGTAACTTCTCCAGTTAACTGATAAAAAAAAGAGTGATTCATTTCATATTGACTTCAGGTGTCCCTGGTGTTGAATTTCCAACACAACTGTGTATTCAATTACTTTGCGAGAATGTTGTTTCGGTCTATGCATTATTCTGTACTTGTAACTGACTAGTTTTCCATATGGCGGTATATTTACTTTACTTCACTGTGTTTTGGAAGATAATTCCATTTTATATCTATCTGGTTTTAGCCAAACGTGTTATGCAGGTTTTATGGCACTTTTCTTCAGTCTTCTCACTTCTGACCAATAAAGAGCATTCCATATGATTTGTGCTTTAGAGTTCATTgtttatttttcataattttaACATTAAATCTCAACATGAAAATTAAAGATCCACCCATTTATACAAAATACAGTACAGATATTAATTGTACTGTTTGTTAAAATGTCAAACTGTTAAGAAATTCAGGATGTAATTAGACCTGTTTGACCTGTTAATTACCCAGTTGAAAATATCTGAACAGAAACATCAGCATCAACATTAAATCAACTGACTATTTACATGATTTATTGtacaataatatatcaaccgtaCTCTGTTGTGTACTATCTCATGTCATTTCATAATTGACAATGTATAAAAATGTTGTAAGCTATAAGAAAATAATTTACAGAAGAATTACAGACTCCTTAATGAATTAATTAATTTGAACTAATTAAGCATTTGTTTTAGTTTGGTGTTTTGGCTAGTAATCTTGTTCTTATGTTCTACTGTCTTTCAATTCtttattatgtatttttttaatgtcTTTCTGTTTACACACCTGTCTGTAATCTGAGCCCCTCActggaaaaaaacaacaaaaagttTCCCACAATTATTTTTTAACACTAGCCAGGATCCAAACTTCTACATGGAGCCCCaaagagttctacctgcaaccaaaactGGTTCTTCAAAGGTTCTTCAGACAAAGAACCTTTTTAAGGTTTTGAATATcaactttttttctaagagtgtagacatTACACCAGTTCACAGAACACCCCCATATACGGCGTACCGATAACCTTCCCACATGTGCACATGGGACCCTGTTGAGACACATGCAGGTGGTAGAAAGACTGCCGCTGCTGAATCTTGGGATGTTCGTGGACCACTCCACATGGGCACCCCCACTGCTGCTCTGGCTGAATGTTCGCTCCATAGAGACCGTACCCTCCAAAGTCATTTAACTGACTGAAACCTCCAAGGAATTGGGCACTAGATTGTCTGGCTTTGGCTGGGCTACTTCCTGTTCCCAGGCTGACGAAGGGAGTTAGGTCACCCTGATGATGCTCGATCTCCATTCTGTGCAGTTCCGTCCTCTGGTGATATCTGCCCCTGCTGTAGAAGGACAGGGATGGTGGGTTGGAGGTTTTGTCCCAGAACACTTCTAATTCTATGGGACGGGGTATTGTTTCAGGTTGAGCTGCAGTTTTCCCAGGAAGATAGAGTAACTGAGACTTTAAGTCTGCCTGTGAACTCAGTTGGCCCTTCTGCCAGCGCAGAGCAAACACGTTGGCATTCCCAGAAGAAGAAATGTTGACACATAAGCCAATGGTCCAATCACAGTCCTCAGATAGTTTGACCACCCACCTAGGATTGGCATCAGAGCCGCTATCCTGGCACAGAAGAGTATGGGTGGTGAGTTTGGCAAGCGGGGTGTAGAACACTTTCCTGTGGTCCTGGGAAAGAGACATTCCCCTTCCCAAGCTCTTGGGGTCAAAGGTCATTGTGGTGGAACCCTGTGCTTTCTGGTGGTTCTCGGGGTCGACCAGAGCCAGCAGAGAACTCCAAAGCTGTGTCATCTGCTCCACGAGCTTTCCTCCACTCTGCTGTAGCTCCTGGACCAGCCTGTCCTGGTTGGCCCCAGGCTCCAGCCCCTTCCTCAGATCCACAGCACGGGCATTCTCCACAGCCTGGTGCACCCCTGCATAACCCTGGAGGAAGCGGAAGGAGTCCCCATCAGACAGGGCAGCCTGCATGGTCTTCTTGGAGGTATTTATGGACACTATGCGAGCTGAGACGGAGGTCTTGACGCTGGTTAGGGCGCTGTCGCACAGGACGGACACTCCCTCGATGAGCCGGACACTGGAGCTAGAcaacctctccctctgctccttaTCCCACCTCTCTAGATCctgaatctgtctctctctctgggccaacTTCTTCTGCTCTTCCTTCAGCTTCTCTCCCAGCTCTTTGTGTGCCTTAGGCAGGGTTTTCATGTTGTGGACACGGTGCTGGTCCTCGATGGCGCAGGACATGCACACACTGGTTAGGTCGTCCAAGCAGTAGTACTC

Function

NR:

description
PREDICTED: tripartite motif-containing protein 34A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU884289 True 2412 lncRNA 0.44 2 16871108 16877304

Neighbor

gene id symbol gene type direction distance location
LOC110531624 LOC106577801 coding upstream 31655 16828786 ~ 16839453 (+)
LOC110531623 LOC106577803 coding upstream 49766 16777534 ~ 16821342 (+)
LOC110531622 LOC106577817 coding upstream 277503 16589215 ~ 16593605 (+)
LOC110531621 LOC106577824 coding upstream 282723 16582409 ~ 16588385 (+)
LOC110531620 LOC106577818 coding upstream 397708 16454905 ~ 16473400 (+)
LOC110531630 NA coding downstream 15039 16892343 ~ 16907677 (+)
LOC110531629 LOC106577796 coding downstream 36766 16914070 ~ 16925975 (+)
acin1b LOC106577794 coding downstream 48908 16926212 ~ 16953584 (+)
LOC118966195 NA coding downstream 50356 16927660 ~ 16927776 (+)
LOC118966194 NA coding downstream 51442 16928746 ~ 16928864 (+)
G776033 NA non-coding upstream 4298 16866412 ~ 16866810 (+)
G776032 NA non-coding upstream 5441 16865451 ~ 16865667 (+)
G776024 NA non-coding upstream 18890 16851999 ~ 16852218 (+)
G776023 NA non-coding upstream 19169 16851643 ~ 16851939 (+)
G776022 NA non-coding upstream 24960 16845938 ~ 16846148 (+)
G776044 NA non-coding downstream 4837 16882141 ~ 16882410 (+)
G776045 NA non-coding downstream 7235 16884539 ~ 16884800 (+)
G776003 NA non-coding downstream 9266 16886570 ~ 16889477 (+)
G776004 cideb non-coding downstream 12426 16889730 ~ 16891747 (+)
G775945 NA other upstream 187617 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 528298 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 620244 16233342 ~ 16250864 (+)
G775306 NA other upstream 683658 16186276 ~ 16187450 (+)
G775142 NA other upstream 1004400 15866089 ~ 15866708 (+)
LOC110532942 LOC106577806 other downstream 419751 17292470 ~ 17305629 (+)
G776487 NA other downstream 503321 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 780893 17658197 ~ 17659145 (+)
G777111 NA other downstream 1124585 18001889 ~ 18002182 (+)
G777113 NA other downstream 1125963 18003267 ~ 18005668 (+)

Expression


Co-expression Network