G776004 (cideb)


Basic Information

Item Value
gene id G776004
gene name cideb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16889730 ~ 16891747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU884291
GCCCTACTCATCTCACTTGGCAGCAGACATGAGTGTATATACCTGCACATACTGTCCAATCACTAACACAGGTCAGACGAAACAAATGATAATGTCCAGATcacgacagagacagacagtgtcaaaCCCACCGGAGGAGGTTTCCATGTCTGTCCAGGTTCCAGGGCCATGAGGACAGTGTTGTCGGGCAGATACATCAGGAAGTCTTCAGAGTCTACCACTGTCCCGTCCTCCTCACACACTAGCACTACAGCCAGACTGGACAGGCACAGCATCAGGGCCTGACACACCctctctcagctcctccaGGGTAGCTGCTGTGACACCCTTCCTGGTGCCCCTGTCATGGGAACACACCCTGAATGGTCTCTGGGGGGCCGGGGCCAACGACCACACCCGCCTCGTCACAGACCtgtggaggaaaaggaggaagaaGATGTTCACAAGGCCAAATACTGCCAGCTTGAGGTAGAATTTGCCTAACCTGGTCCGAGTTCTGTTTATGCTCTCTAACCAATGCCTACAGTCATTGACATTTTTCACGCTAACAGATCTGAATCAAGCTAGAAGTTGCCCTGTTCTTGGATCAGTTTACCCCACACACCAATCTTAACCTGAACCATGAAGAGGATATACAACctgaccctgtatcagtggttTGGGACAACTTCTACCTATTCCCTAGTCCATAGATACACAGATAACACATTTGTACTGCACATAATTTCATTTGGCCTAGGAAAGCTACCATAAGATTATAGTGCAGAACAGATACAGTGATACAACTGTATCTATATGTTTAGATGTTAACTAGATATGTTGCTATGTTTTTCTAATGCGTTCTGTAATATTTACTACTGCTGCTGAGGTATAGTATCTCGTGGACAGACTACGTCATTCAGGATCTGACTAAATTGCCAAGATTTGAGTTCTTGGTTAACCGAGATTAGCTGAGGTATAATGTGCTTTAATAAGGGCCCGTGTGGGCTGAGAGGGATACAAAAAGAGATTGAGACTGATTGGAAGACAAAGACAGATCAATCCTAGCTTCATCTGGTGGAGACAGTGTCTGTTTGACAACAGAGGGTTGAAACAAGTATAGAAAACCATTACTATTCTAACTGCCAGTCCAACTTCAATTAAAGCCCTCAATGATATACGTTTTCCAGTGGTTTGTTGCCATTGTGCCTTCTTGACAAATCTCTTGGCACTCAACAGCGTACACCTTTACAAGTACAGTGATAGAGTATTATTAGAAAACTCAGAAAACTCAGATATAGAACAATTGATTGAAAAATGTACACAAAATGTGTGGGGGAAACATTATCCAGACACAGCTATTAGGAAGTAAATGTACTTGCTTTATTAATGATGATGTTGACTCCATatcccactctctttctttccttctctctcttctttacctccTATTTTTCCTTGTGTTGTTTTGGTAGCGTTGGTGCTATGTCGACTCTGATTCTGAATGTGTCTGACCCAGCTAATTCTTTAGGACAGACTTTGCCCTGATGAATCAGATACAAGACACATAGGGCAaagttctctgtctgtgtgtgtacatgcgtgtgtgagagagagcgagtgagaattgaaatgaaattgaatttca

Function

symbol description
cideb Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Orthologous to human CIDEB (cell death inducing DFFA like effector b).

NR:

description
cell death activator CIDE-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU884291 True 1627 lncRNA 0.44 2 16889730 16891747

Neighbor

gene id symbol gene type direction distance location
LOC110531624 LOC106577801 coding upstream 50277 16828786 ~ 16839453 (+)
LOC110531623 LOC106577803 coding upstream 68388 16777534 ~ 16821342 (+)
LOC110531622 LOC106577817 coding upstream 296125 16589215 ~ 16593605 (+)
LOC110531621 LOC106577824 coding upstream 301345 16582409 ~ 16588385 (+)
LOC110531620 LOC106577818 coding upstream 416330 16454905 ~ 16473400 (+)
LOC110531630 NA coding downstream 596 16892343 ~ 16907677 (+)
LOC110531629 LOC106577796 coding downstream 22323 16914070 ~ 16925975 (+)
acin1b LOC106577794 coding downstream 34465 16926212 ~ 16953584 (+)
LOC118966195 NA coding downstream 35913 16927660 ~ 16927776 (+)
LOC118966194 NA coding downstream 36999 16928746 ~ 16928864 (+)
G776003 NA non-coding upstream 253 16886570 ~ 16889477 (+)
G776045 NA non-coding upstream 4930 16884539 ~ 16884800 (+)
G776044 NA non-coding upstream 7320 16882141 ~ 16882410 (+)
G776002 LOC106577800 non-coding upstream 12426 16871108 ~ 16877304 (+)
G776033 NA non-coding upstream 22920 16866412 ~ 16866810 (+)
G776050 NA non-coding downstream 15988 16907735 ~ 16908573 (+)
G776047 NA non-coding downstream 17093 16908840 ~ 16910749 (+)
G776079 NA non-coding downstream 99147 16990894 ~ 16991267 (+)
G775945 NA other upstream 206239 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 546920 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 638866 16233342 ~ 16250864 (+)
G775306 NA other upstream 702280 16186276 ~ 16187450 (+)
G775142 NA other upstream 1023022 15866089 ~ 15866708 (+)
LOC110532942 LOC106577806 other downstream 405308 17292470 ~ 17305629 (+)
G776487 NA other downstream 488878 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 766450 17658197 ~ 17659145 (+)
G777111 NA other downstream 1110142 18001889 ~ 18002182 (+)
G777113 NA other downstream 1111520 18003267 ~ 18005668 (+)

Expression


Co-expression Network