G776340 (LOC106577790)


Basic Information

Item Value
gene id G776340
gene name LOC106577790
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17010012 ~ 17014685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU884666
TAAAAGTGCAAATTGTTTAATCTCTGTGGATTTGTCCACATCTTTGCTATGTACAGTGAAATAGACCCTAGTaaaatctctctctccaaccttaTCACTACATTGCAAGTTTTAAACATATCATCCTCCAACCACTATGTTTAATTGAATACATTCAGTACAACCCAGGCAAACAGAACAACaatttaagattttttttaaagtacatttCTGAAGGATAAAAGCGGAAAAACTAATAAAAGATACGATGTTAAAAATGGCAGACTAAAAAGTCTCTTAATTTGCTATATGTTCACTGTGTGAAAGCGTGGTAGAGTGGATTCCATTCACAAAGGGCTGAGAATTTAAGTCGGGGTTGTTGTGACCGTGGGCCCTGGGGGGCCTCATCTTTCTGTGTGCGGTTGTGCACTTCACAGGTCTAACCCAACCTCAGGCACCAAGAGAGATTGTCTTGTGAGCCGAGACACAATTTGTCTACTAGAGAACTACATTATAAAACATTCATACATCACACTTGCAAGTGCATACGAAACTATACACGTCAGTTATGCCATACGTACACTAACCAGGAGGGTCCCCAAAAATTATTGCCAGCTTGCAGAATTGACATGCAATTTATCCATTATGAAAGCAATATAAAACACAGTCTGTGTGTGAGAAGGTGGGTGTTCCTTTTTGTCCACATATTTGggacagtgtgtacagtatgtgtgtcatCATTCAAATTCATCAACTGTAGCAAGCTTCTGAAAAGGCACTTAGATGGGAGATGAGAACTATACATGGGATAGTGTCTACACAGGACATCTACATATCCTTACACTGGCCCCCATATGCTCACCCTTACATGACGCATTCACACATATGCtgtcacacaaagacatgaactCTTTCACGTGCTAAAACCAATCATTCACTTGACAGTaaattatatattataaaccggGTGGTTTTGAGCCCTgattgctgattggctgaaagccatggtatatcagactgtataccacgtgtatgacaaaacatttatttctactgctgtaattacgttggtaaccagtttataatagcaataatgaacctctggggtttgtggtatatggccaatataccacggctaagggctggaTCCAGGCACTTCGTGTTGCGTcctgcataagaacagcccttaaccgtggtatattagccatataccacaaactccAGAGGTGCCTCATTGCTTAAATTAGATCATGAGGGAGAGATTTTCTGTGCAAATTTCACCTCTTTCAGACTATATCTGGATAAGTGCACATCCAACACACAaataccctaatacacacacacacagccctattccctacctgTTGCTGTCGCAGTGGAAGGTCCCAGGTTGACATATGGTACAGTCTTTTTCGTCGCTCCCGTCAGCACAGTACAGCTGGTAGTTACACCTCTCCTTGGCAGGGAAGCACACCGGACGCCCGATGAAGTTATGACCCGCCAGCACCGCCCGCTGCCCCACCCCTCCGCAAGCAAACTGGTCCCTGGGACACCCCCTGCATCCCGCCTCATCATGCCCCGTCTCAGGACAGTCCCAGCGCCCGTCACACTTCTGTTCCTGGGTGTAGCAGCCCCCCGCGGCACCCCCACATTTACCCTCCCAGGGGGGGCAGTAGCCCCCGACACGGTAGGTGGCGTTGAAGCCCAGCCCCTCCGAGCCGGGAAGCGTGTGATAGGTCAGGGAGAGAAGGCCGGTCCGGGACTCAACCTGGATGGCCTTGTAGCTGGACTCGCT

Function

NR:

description
low-density lipoprotein receptor-related protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU884666 True 1774 TUCP 0.46 2 17010012 17014685
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531636 LOC106577791 coding downstream 6919 16982710 ~ 17003093 (-)
LOC110531634 LOC106577795 coding downstream 43789 16953773 ~ 16966223 (-)
LOC110531631 dhrs4 coding downstream 96064 16908838 ~ 16913948 (-)
LOC110531628 cideb coding downstream 118302 16886528 ~ 16891710 (-)
LOC110531626 LOC106608856 coding downstream 181429 16827053 ~ 16828583 (-)
LOC110531638 LOC106577815 coding upstream 13917 17028602 ~ 17043723 (-)
LOC110532941 LOC106577784 coding upstream 36064 17050749 ~ 17064251 (-)
LOC110531640 LOC106577784 coding upstream 62245 17076930 ~ 17080885 (-)
LOC110531642 ylat1 coding upstream 291605 17306290 ~ 17317711 (-)
LOC110531643 LOC106577781 coding upstream 306746 17321431 ~ 17327614 (-)
G776347 NA non-coding downstream 5441 17004342 ~ 17004571 (-)
G776346 NA non-coding downstream 5933 17003796 ~ 17004079 (-)
G776329 NA non-coding downstream 38481 16971034 ~ 16971531 (-)
G776247 NA non-coding downstream 56433 16952406 ~ 16953579 (-)
G776310 NA non-coding downstream 84074 16923551 ~ 16925938 (-)
G776350 NA non-coding upstream 1265 17015950 ~ 17016162 (-)
G776352 NA non-coding upstream 3324 17018009 ~ 17018236 (-)
G776353 NA non-coding upstream 7959 17022644 ~ 17022982 (-)
G776370 NA non-coding upstream 26395 17041080 ~ 17041359 (-)
G776371 NA non-coding upstream 27292 17041977 ~ 17043070 (-)
G776294 NA other downstream 143978 16865467 ~ 16866034 (-)
G775532 NA other downstream 1096718 15912836 ~ 15913294 (-)
G775139 NA other downstream 1146178 15862320 ~ 15863834 (-)
LOC110531603 groa other downstream 1222406 15781909 ~ 15787666 (-)
G776355 NA other upstream 10695 17025380 ~ 17025813 (-)
G776461 NA other upstream 230749 17245434 ~ 17245797 (-)
G776652 NA other upstream 304930 17319615 ~ 17320373 (-)
G776642 NA other upstream 330793 17345478 ~ 17354347 (-)
LOC110532943 LOC106577805 other upstream 402962 17402378 ~ 17547902 (-)

Expression

G776340(LOC106577790) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

G776340(LOC106577790) Expression in each Bioproject

Bar chart with 18 bars.
G776340(LOC106577790) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network