XLOC_026973 (slc38a2)


Basic Information

Item Value
gene id XLOC_026973
gene name slc38a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1600034 ~ 1617897 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053240
ACGACTGTGATACCGGACGCGCCCAGAAAGCATCTCTGTTAATCTCCGACATTAATATTAACCTTTTTATTGTTACACTAGGCGTGTGTAGTATTACAGTGTttctgtttatgttttatttactttattaattattaagaatatttatttgctATCTATAacggtacatttttttaaagtgtaagccATTTGCTGTCGATTTTCTGGAACATTCTTCACAACCTGCCGGATTTGCTCACTTTTTTCCATTCATACCGGAGCTGAAGAAACGGATTTCTCTTTAATTTCTGAGAATGAACAAAGCCCCGGCACAGATGAGTCGCTTTAACATCGCTCCAGACATGGACAGCAGCAGTACAAACAGCAATGAATACACAAACTACCAGGACCATGCCTCAAAAGTCCCTCTCAATGGGATTCAGTATAGTGATGTGGAAGCAGAAAGTCAGAACTTCCTGTCAGATCATCACTTGGGGAAGAAGAAATATGAGGCTGAATATAGCCCTGGATCTGCGTCATTCGGGATGTCAGTGTTTAATTTGGGCAATGCCATCATGGGAAGTGGAATCCTAGGACTGTCTTATGCTATGGCCAACACCGGCATCGCCATGTTTGTgATCCTGCTGGTGGCTGTGGCCATTTTCTCGCTGTACTCAGTCCATCTGCTGCTCAAAACGGCCAATGAAGGAGGGTCTCTGGTGTACGAACAGCTGGGGTACAAAGCGTTCGGGATTCCTGGCAAGCTGGCAGCGTCCTGCTCTATCACTATGCAGAACTTTGGAGCTATGGCGAGTTACCTCTACATCGTGAAGTATGAGCTGCCCATCGTCATCAGGGCCTTCTTAGACTCCAATGACAAtGCGTGGTACACTAACGGAGATTACCTGGTATTGATCGTCACTATGAGCATCATCCTGCCTCTCTCGCTGCTCAAAAACCTGGGTTATCTGGGCTACACCAGTGGATTCTCCTTGTTGTGCATGGTGTTCTTCCTTATTGTGGTGATCTACAAGAAGTTCCAGATCCCCTGTCCGCTGCCTGAAAACTTCATTAACATCACAGTGAACGTCTCTCAGCCGCCGCAGACCAACAACAGCACCGATGAAGAGTGCTGCAAACCCAAATACTTCATCTTCAACTCACAGACTGTGTATGCTGTGCCCATCCTGACTTTTGCCTTTGTGTGCCATCCGGCCATTCTGCCCATGTATGAGGAGCTCAAAGATCGCTCCAGGAGGAAGATGCAGAACGTTGCTAATGTGTCGTTTCTGGGAATGTTTATTATGTATCTGCTGGCTGCGCTGTTTGGATACCTGACCTTCAATGAGGCTGTTGAACCCGAGCTCCTGCACACATACTCAAAGGTCTACAATTTCGATGTGGTGCTTCTGATCGTTCGTTTGGCCGTCCTGACCGCCGTTACATTGACTGTGCCTGTGGTTCTCTTCCCGATCCGCACCTCTGTCAACCATCTGCTGGGCGCCAGTAAGGAGTTCAGCTGGCCGCGGCACATCTGCATTACCGTCGCTCTGCTGGTCTGCGTCAATATCCTCGTCATCTTCGTTCCCACCATCAGAGACATCTTCGGCTTCATCGGTGCGTCTGCTGCTGCTATGCTGATTTTCATCCTGCCTTCAGCTTTCTACATCAAACTAGTGAAGAAAGAGTCTATGAAATCAGTCCAGAAAATCGGGGCCACATTGTTTCTCATTATGGGCTTCCTGGTGATGACCGGCAGCATGGCCTTAATCATCATGGACTGGATCCACAATGCGTTATCTTCAGAAGAACACACTGGTGGCCATTAGTGGGCGTGTCCTGACTGTGATTGACAGGCAGGTGGGCGGAGCCAAGCCGCTTGCGCTGCTACTGAGATCTAGAAGAAGCTGCTCTATTATCAGCGCAGAGCAAAGACAAACATCCCATTCTGAGAGAATGTTCTGAACTCTGTACAGTATCCCGTTAGGCCACACAGATGGTGATCCACGcgtatttgttttgttgttgatttgcttttcttttttacgTTGTTCGTCTGGTACAGCTGGTACGGGAGCGTGTGCATCCTTCAACCGGTTTCAGGTTTAGCGTTTCGTTTTCTCACAAACCAAAAGCGTACTGAGCGAGCGGAGCGATCCGTTTGTACCCTTGCCAAAAACAATATTGGTGTTTTTATATGTGGATAAGCACTTAGTCTTTATTCAGCAAATGTGAAAAACAGAACTGTCATTTCGCACATTTTGCCTGTGCTTTAAATTGCATTGGTTACGATGCCATTTATACTGTACTACTACTTGAGTCACCTTTACCTGTCGTGTAGATCTACTAATGAACAAATAATCAGCAGTAGTTGTTGATTTCAGACAGGCGGAACGGCTGAATTTCACCACAGTGATGGCTGCTTTAAAGTCGATGTGAGATTAAAACTCACTTTTCTTATCTAATCTGGAGCGGTTCTTCATCACGTGTTATCTGAGACGATACGACACATCAAAATGATGTTCATTAATACTTTAATAACTGTTATTTAAAGGGCTGTTCACATAGTAATGATGATAACTGTACAAATATTACTACTATTTATGTCATCGCCAGCAAGCAAGaacatttagttttagtcttttcTTTTGCAATACCCCCTTTTATCCAGCAGATGTCCTCGGTGTGCTGCATTTCTAGTgaatctgaccagtgaatccagcttgtgtaaTTTATGTAACATAATATAAACAGTGAATTTAGCCATTTTAGTAAGTGTATTTCATTATTGCCTCCAGCATTTACAAACACGCCAAAGCTAGCACTGAATACCTGAGGTACtttcatttttatgctttagCTTTTTTTGCTAGCCTGACTTCAATGTACATATGTGTCATTACTCCCCATGGAATAATCAATTATATTAtagtcattattcattcattttcttttctgcttagtccctttattaatccggggtcgccacagttgaatgaaccgccaacttatccagcaagtatttACACttgcagcagcaacccatcactgggaaacatccattcacactcatacactacagacaatttagcttacccaggtcacctgtaccacatgtcattggacttgtgggggaaaccggagcacccggaggaatcccacgcgaacgcggggagaacatgcaaactccacacggaaatgccaactaacccagctggagATCGAACCAGCGGCTTTCacggtgtgaggcgacagcattacctactgcgccaccgtgtcacccattaTAGTCATCatcttaaataacattttaaagaagGTTTAACATCAGGCAGAGCTTCTCCACAATGTCTGCTGTTGCTTTAAATTGCGTAAATCCTTATTATTTAATGGATTCTGACCGGCTGTCAGGGTTTAATCATGTATTAGCTGGACAAAATCAGTCTGAAAGTAATTCATTTCTCCACATCTTTATAGTTATAGCTGTGATCTGAACTCTGCTGCTGGTTTACATTTAGACTTATCCTTATTGTTGTATTTATAGTGATCATACTTGCTGTGAACGGCCCTTTAGTCTACTGTAGGGATTATTCCCTTCCTTTAATGTTGCTTAACATTAATACAATGAAGGTAGCGATAACGGTAGTGAATGATGATGATGGAAATTTAATATCCATCACATTATTAAAGTCGAATGAGCTGCTAATGTTGTTTCACGTTGACCTGAAATAACTAAATCACGGTTATCAGTCgttaaaatgatttaatcattGTTTAAGACTGATGTAGAAGATGCATCCTTTCTCAAatctttaacattaataatacgAAGGTTACGACAATATggtcaaaataaaagatttaaagggagagttcacccataGATATAATGAACGcactatttattcaccctcaaatgTTTccagaatttctttcttctgttgaacaaaaaagaagatactttgaagaatgttggaaaccattgaCTCGCATAGTTGTAACAAGTAACACTACTGAAAgtgagcattcttcaaaatatcttcttttgtgttcagcagcagAAAGAAGCTCGTAATGGTGAtcaaatggtgacagaatttgatttttgtgtgaactgcccctttaagacaccgtgtttttatttttgctgtgCTTTTTATGACTGCTTTACCTTGGTGAACGGGGAAACGGAAGCAAAATGAGTTTAGGTTTGCGTTAACTTTAAAGCATCTCTGTTCAATGGTCATTCGTTCTGCTGGTTTTATGTTTTAAGCGCAGAATCAGATGCCAAACATCGCTGTTGAAGAGTGATTAATTTACCATTTCAGTGTTTGCCATCGGCAGCTTGAAGATACTCCATtattgagagacagacagatagacagatgagGAGTGTGTGTCTACACTAATCAGCCGTTATGAGTGTGATgaatgaccacacacacacacacacacacctcactgtGTGCTTCCAACAGCTCAACCTCACGTGTCAGCAACCTGTTACTCTCCAGCCGTTATTTATGGAAGAACATCAGtgtaatttaatctattttactatatttatatatgaatatatattgtatatatgtgtatagaCCACAGAATGGTGAAGTGTATATATGCTGTTGTTTTGGGCTTTTTATTCCTTCTCAATTTTGCTCAACATgtttaaaatatgactttacatgTCCCTCAGTGTGTGCTTCTGGGTTTCGATCGaccctctacacacacacacacacacacacacacatgaacacacactttTACATTACTACTAAAATGCTGTACTCAAACCTGCGAGGGGTCGAAGCTCCTCATGTACAAGAGGCCATTCCTGCGAATGATACGCTCTTGTTTCAATGAAACACTATGTATATCATGTAATTAATGTCTATTAAAGGTTCAAGATAACCCA
>TCONS_00053241
GGTCTCTGGTGTACGAACAGCTGGGGTACAAAGCGTTCGGGATTCCTGGCAAGCTGGCAGCGTCCTGCTCTATCACTATGCAGAACTTTGGAGCTATGGCGAGTTACCTCTACATCGTGAAGTATGAGCTGCCCATCGTCATCAGGGCCTTCTTAGACTCCAATGACAAtGCGTGGTACACTAACGGAGATTACCTGGTATTGATCGTCACTATGAGCATCATCCTGCCTCTCTCGCTGCTCAAAAACCTGGGTTATCTGGGCTACACCAGTGGATTCTCCTTGTTGTGCATGGTGTTCTTCCTTATTGTGGTGATCTACAAGAAGTTCCAGATCCCCTGTCCGCTGCCTGAAAACTTCATTAACATCACAGTGAACGTCTCTCAGCCGCCGCAGACCAACAACAGCACCGATGAAGAGTGCTGCAAACCCAAATACTTCATCTTCAACTCACAGACTGTGTATGCTGTGCCCATCCTGACTTTTGCCTTTGTGTGCCATCCGGCCATTCTGCCCATGTATGAGGAGCTCAAAGATCGCTCCAGGAGGAAGATGCAGAACGTTGCTAATGTGTCGTTTCTGGGAATGTTTATTATGTATCTGCTGGCTGCGCTGTTTGGATACCTGACCTTCAATGGTGAGCGAAACGCAGACACATGTCCACATCAGAGCGCGTTACGAAACCTCTGTCTGATGCCAGTTTCAGAGCCGCACTGTTTGCTTtaatggaggtgtgtgtgttaaAGGCCTGCGGATTGAGCCGGACCAAAGCCAGCTTTCAGTCTGATCTGTTTCGCAAGTTTTGGGAATAAATAAGGGGCGTTCAGCTGTTTGCCGCAGCAGGAACAGAACatcacatttgatgtttttactcTGTCCTGATAGATGGGAAAGGTTATGCAACAGAGGGATTTCTCAGACCAGGGAAAATAAACATTCTTGTGGGATCTGTTGTTTGATGTGTTAGACatagttttattaaaagtaataaaaggtttttctgtttatttgtttggatCAGtgcaactaaaataaaactaaacaaaacatt
>TCONS_00053242
CATTACCGTCGCTCTGCTGGTCTGCGTCAATATCCTCGTCATCTTCGTTCCCACCATCAGAGACATCTTCGGCTTCATCGGTGCGTCTGCTGCTGCTATGCTGATTTTCATCCTGCCTTCAGCTTTCTACATCAAACTAGTGAAGAAAGAGTCTATGAAATCAGTCCAGAAAATCGGGGTAAGACATTTAAATCCATCTGCATGTATTTAAAGGATTCTGAAGTGGTTTGATAGAGTCTCTCATCACTCTTCTCCTCCTCATCAGGCCACATTGTTTCTCATTATGGGCTTCCTGGTGATGACCGGCAGCATGGCCTTAATCATCATGGACTGGATCCACAATGCGTTATCTTCAGAAGAACACACTGGTGGCCATTAGTGGGCGTGTCCTGACTGTGATTGACAGGCAGGTGGGCGGAGCCAAGCCGCTTGCGCTGCTACTGAGATCTAGAAGAAGCTGCTCTATTATCAGCGCAGAGCAAAGACAAACATCCCATTCTGAG

Function

symbol description
slc38a2 Predicted to enable L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in lens; notochord; and solid lens vesicle. Orthologous to human SLC38A2 (solute carrier family 38 member 2).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0006868 glutamine transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015186 L-glutamine transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption
ko04724 Glutamatergic synapse
ko04727 GABAergic synapse
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-9659 Predicted to enable L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in lens; notochord; and solid lens vesicle. Orthologous to human SLC38A2 (solute carrier family 38 member 2).

Ensembl:

ensembl_id ENSDARG00000045886

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053240 False 4900 mRNA 0.42 16 1600034 1617897
TCONS_00053241 False 1050 lncRNA 0.46 7 1605666 1611213
TCONS_00053242 True 503 lncRNA 0.48 2 1613617 1614929

Neighbor

gene id symbol gene type direction distance location
XLOC_026972 NA coding upstream 6222 1576850 ~ 1593812 (+)
XLOC_026971 slc38a4 coding upstream 33462 1516716 ~ 1566572 (+)
XLOC_026970 trim35-14 coding upstream 133639 1461079 ~ 1466395 (+)
XLOC_026969 NA coding upstream 148979 1447055 ~ 1451055 (+)
XLOC_026967 NA coding upstream 187901 1400312 ~ 1412133 (+)
XLOC_026974 scaf11 coding downstream 1687 1619584 ~ 1643101 (+)
XLOC_026975 NA coding downstream 66131 1684028 ~ 1685509 (+)
XLOC_026976 NA coding downstream 68589 1686486 ~ 1689357 (+)
XLOC_026977 fgfr1op2 coding downstream 105002 1722899 ~ 1730920 (+)
XLOC_026978 NA coding downstream 114930 1732827 ~ 1735224 (+)
XLOC_026968 NA non-coding upstream 191993 1405603 ~ 1408041 (+)
XLOC_026966 CR548631.1 non-coding upstream 408390 1191527 ~ 1191644 (+)
XLOC_026981 NA non-coding downstream 207706 1825603 ~ 1827105 (+)
XLOC_026982 NA non-coding downstream 225072 1842969 ~ 1845156 (+)

Expression


Co-expression Network