G776109


Basic Information

Item Value
gene id G776109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17050810 ~ 17076496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU884412
CATCATTACAACATATCCTTTATTTAAGCTGTTACAGTAATACACACAGGGTTAAATAGAATATATTTGTTGTATTTATCTGGTAAATTAAAATAACATACAAATCCTTCATGTACaaggtgttattgtgtgtgtgtccctcacaGAACAAACACATGAGAAATGTAACGTGAAATCACGTTTTCACATGTGCAGTTCCATGTCATATGTTGTcacATGTCACATGTTATCATATTAACTTCAAATAAGATCACGTTATCACATTAAC
>TU884413
CATCATTACAACATATCCTTTATTTAAGCTGTTACAGTAATACACACAGGGTTAAATAGAATATATTTGTTGTATTTATCTGGTAAATTAAAATAACATACAAATCCTTCATGTACaaggtgttattgtgtgtgtgtccctcacaGAACAAACACATGAGAAATGTAACGTGAAATCACGTTTTCACATGTGCAGTTCCATGTCATATGTTGTcacatgttgtcacatgttatcaTATTAACTTCAAATAAGATCacgttatcacattaacttcaaaTAATATCACGTGATCAcatgaaaacatgtgtttttggaataCTTCACATGTTCACTTGTAAGAGTGAATGTGTTTTTTCTGTATTTGTGTGttcgtgtgcatgtgtgtgtgtgagcatgcctgcatgtgtgtgtgcttgcgtgcatcCAGCATGCATAACCCATGTTCCCAGATGGCTCCTACGTCTCCTCTGATGGTgtgtccctccatctccctcaaggaCCTGGGGTTGTGCCTGGCTTCAGTTGAGAATAGACTGAATCTGTCTCAGGTGGGGTTGTTTCTGTAGGGAGTGAGgataaaatatatagatattcaATATGTGGTCAGAGGTGTGAGGTTCTGATAGGGGgaatatggagggagggatgtccagtct

Function

NR:

description
basement membrane-specific heparan sulfate proteoglycan core protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU884412 False 268 lncRNA 0.31 2 17050810 17076496
TU884413 True 656 lncRNA 0.39 2 17050810 17052835

Neighbor

gene id symbol gene type direction distance location
LOC110531637 LOC106577790 coding upstream 36125 17006102 ~ 17014685 (+)
LOC110531635 LOC106577792 coding upstream 73513 16966706 ~ 16977297 (+)
LOC118966193 NA coding upstream 118306 16932388 ~ 16932504 (+)
LOC118966194 NA coding upstream 121946 16928746 ~ 16928864 (+)
LOC118966195 NA coding upstream 123034 16927660 ~ 16927776 (+)
LOC110531641 NA coding downstream 29116 17105612 ~ 17123052 (+)
LOC118966007 NA coding downstream 67517 17144013 ~ 17185719 (+)
LOC118966008 NA coding downstream 126121 17202617 ~ 17222400 (+)
LOC118966176 NA coding downstream 164374 17240870 ~ 17242550 (+)
LOC118966167 NA coding downstream 177770 17254266 ~ 17265417 (+)
G776102 NA non-coding upstream 12162 17038395 ~ 17038648 (+)
G776094 NA non-coding upstream 26845 17023741 ~ 17023965 (+)
G776092 NA non-coding upstream 29695 17020778 ~ 17021115 (+)
G776079 NA non-coding upstream 59543 16990894 ~ 16991267 (+)
acin1b LOC106577794 non-coding upstream 97226 16926212 ~ 16953584 (+)
G776130 NA non-coding downstream 3297 17079793 ~ 17080251 (+)
G776131 NA non-coding downstream 13813 17090309 ~ 17090588 (+)
G776133 NA non-coding downstream 16557 17093053 ~ 17093255 (+)
G776135 NA non-coding downstream 19122 17095618 ~ 17095855 (+)
G776136 NA non-coding downstream 21420 17097916 ~ 17098170 (+)
G775945 NA other upstream 367319 16683194 ~ 16683491 (+)
LOC110532939 NA other upstream 708000 16315734 ~ 16342810 (+)
LOC110532936 LOC106577844 other upstream 799946 16233342 ~ 16250864 (+)
G775306 NA other upstream 863360 16186276 ~ 16187450 (+)
G775142 NA other upstream 1184102 15866089 ~ 15866708 (+)
LOC110532942 LOC106577806 other downstream 220559 17292470 ~ 17305629 (+)
G776487 NA other downstream 304129 17380625 ~ 17394121 (+)
G776818 LOC106600668 other downstream 581701 17658197 ~ 17659145 (+)
G777111 NA other downstream 925393 18001889 ~ 18002182 (+)
G777113 NA other downstream 926771 18003267 ~ 18005668 (+)

Expression


Co-expression Network