XLOC_026975


Basic Information

Item Value
gene id XLOC_026975
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1684028 ~ 1685509 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057504
CGTTTCGCTGAAATTCGGTCAAACTCCCGGCTCAGATTCGGTTTCTAAGAGTCCGGGGATCCCATGCTCCGGTCCGCTCCGCTCCGGCGCGGCTGCGTGTTTGAAAAGTTAAAGAAATGACGGAGGATGAGAGTGGAGAAACCCGCTCCAGCGGCAGCCCGAGCAGCCCGCGAACCCGAGCGAGCTCAGCCTAACTGCACCGCTGCACTGCTCATGGCTGCACGGGGAAACGACGGTACCGGCTGCGCCTGTGTTGGTGTTTGGAGTGGGTTTTTGACAGTGCGGGACGGACGCGGCTCCGGTTTAATCGCGCACACTGTGAAGCGGCAGCGGGATCCAGTTCAGACAAAAAGACCCGAGGCCGCGCGGCTCCACGGCGCCTCCAGCAGGCCAACGACAGTACTGCAGCCGCCACAGCGCCGTTGTGAACAATAGACGGAGCTCGCTGGAGGAAAGGGGGAGTCGCGAAACTCTGGTTAACCGTTAAAACAGAACCCAACCGTGAGCGTCGGAGGGGGGAAGGGAACTGTCAACTTACACTAGcgtcatgaaaataataaaacttgAGTCGAAAGTAGTTTCTGGTCGTGTAAAATCTCCACAGCTTCGACAGACAGTGATGAGAAGAAGCGtaaatgaatgtttgttttaaaattcagtCACGTGTAGTCATGACTACCTCCATCCACTGATAATCAAAGAGTTGCCATTGTgctgtaaaatgtaaatttgcatAAACATATATGTTCTTGGTGTGACATAAtggcatgaaatagcatgttcaAAGACTTGTCGTCCTCTAAAAAACAGTACTAATCTGGCACAGAGCGCTGCTCGGAAATACACATTAATAGCTTAAGTTAAACCGTGGTGTCTGAAGTTAAAGTAGTACAATCTGCGCTTTGTTGCAGCGAACGGTCGGTAATTTTCTCCCGGTCCCTTGTGGTAACCGCCGGGCGGATATAAACGACACGGGGTGACTACATTCAACCATTACACGCACCCCTCTCGCAAGTTATTCAGCCACAAAATGGCGGAACTCGACGCGAAAGACCCCATTTTGTCAAGCAGACGACACGAGCAGTTGGAAAAAGCGGAATTTAATATTTCCAACGCTGTTTTCAGCGAGTTGTGGATGTTTTTCTCGGCGCCTGCTGATATGTTGTGGCGTCGCGCGGCAGATGGAGAATAATGTGCGCGCGCTCTGGCTTTGACGCAGCTCGAGCGCTCAGCGGCTGAAGACACATCAAGATACATTTATCCACCAGATTAGATTTATATCACATCTGTACATTAATAAAGCTTAGAAAACTTAGCATTTAATGTGAAGTCTTGATATATTTTGACTAATATGATCTGTTGGTATTGTGCGGGTTGTTTTGTATTTGGTAAATATTGATAATCTGTCCCCATATTTTATGAACGGTTGTGTACTGTAAggttgtatattattttaatctgTTAATAAATGTTGCTAGTTGT
>TCONS_00053245
TTACACGCACCCCTCTCGCAAGTTATTCAGCCACAAAATGGCGGAACTCGACGCGAAAGACCCCATTTTGTCAAGCAGACGACACGAGCAGTTGGAAAAAGCGGAATTTAATATTTCCAACGCTGTTTTCAGCGAGTTGTGGATGTTTTTCTCGGCGCCTGCTGATATGTTGTGGCGTCGCGCGGCAGATGGAGAATAATGTGCGCGCGCTCTGGCTTTGACGCAGCTCGAGCGCTCAGCGGCTGAAGACACATCAAGATACATTTATCCACCAGATTAGATTTATATCACATCTGTACATTAATAAAGCTTAGAAAACTTAGCA

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097341

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057504 False 1482 lncRNA 0.48 1 1684028 1685509
TCONS_00053245 True 325 lncRNA 0.47 1 1685021 1685345

Neighbor

gene id symbol gene type direction distance location
XLOC_026974 scaf11 coding upstream 40927 1619584 ~ 1643101 (+)
XLOC_026973 slc38a2 coding upstream 66131 1600034 ~ 1617897 (+)
XLOC_026972 NA coding upstream 90216 1576850 ~ 1593812 (+)
XLOC_026971 slc38a4 coding upstream 117456 1516716 ~ 1566572 (+)
XLOC_026970 trim35-14 coding upstream 217633 1461079 ~ 1466395 (+)
XLOC_026976 NA coding downstream 977 1686486 ~ 1689357 (+)
XLOC_026977 fgfr1op2 coding downstream 37390 1722899 ~ 1730920 (+)
XLOC_026978 NA coding downstream 47318 1732827 ~ 1735224 (+)
XLOC_026979 med21 coding downstream 71953 1757462 ~ 1759555 (+)
XLOC_026980 pmpcb coding downstream 75520 1761029 ~ 1771308 (+)
XLOC_026969 NA non-coding upstream 232973 1447055 ~ 1451055 (+)
XLOC_026967 NA non-coding upstream 271895 1400312 ~ 1412133 (+)
XLOC_026968 NA non-coding upstream 275987 1405603 ~ 1408041 (+)
XLOC_026966 CR548631.1 non-coding upstream 492384 1191527 ~ 1191644 (+)
XLOC_026981 NA non-coding downstream 140094 1825603 ~ 1827105 (+)
XLOC_026982 NA non-coding downstream 157460 1842969 ~ 1845156 (+)
XLOC_026983 NA non-coding downstream 160121 1845630 ~ 1852654 (+)

Expression


Co-expression Network