G776642


Basic Information

Item Value
gene id G776642
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17345478 ~ 17354347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU885001
TGCGCTCCACAAACCTTTCTATGTTGCCATCCAGTGCACGGACCGCACAGAGTCTTGTGCAGTTCGCGACAGCTGGCCTTTGAACTGACATCAGATAGTCCACCAAGCAAAGTTGCAAATGGTGAATTCACCATTGAATTGGAACCAGTAGTCCGATACGATTGTACAGGTAGCCTACTTGAAAATTGCGCATTGTTCTTCAAGATCTGCAAAGTTGCAGCTACATCAGtggtCCTCAGCTCCAGACATGGGTGTGAAGGTGCTCCAGTGCTTCCCCTGGTACAGACGCTGTAAAGAGCGATGCAAGGCTAAACAGTGCCCCCCACCTGCAGTCCCCAGTGAGGAGATGAAGCCCCGCCTGTCGTCCACAGTGTCGTGTGGTAGCGAGGGCGAGAGCAGCAGCAGTCTGAGTGGCTCCCAGATCTACTTCTCCACCAAGGCTCGCCTCTCCTTCAGACACCAGATGGACAGCAACTTCAACGCAGTGGATGCCACCTGCTGAATAGATCAGCCCCGACGTGCCGAGTAGTCTTCAATAGGCATCAAACGGAAGAAAAAGGACTGAAATAGGGAGGGAATACCTGGGCTTGTTCGATAAGAAGCGCTTCCGTTGTGAAACATTTTTGCTACGGTGtaccctaatgaatacgaccctggcTTACAGTGCTGGGAATGACACTTTAGTTTCTACTGAGGCATCCCTCCTGTAATCATCACCATTGCCCAAAAATGAACTCTCGCCCCTCCACTATGATATCCATTATTATAGCTCAACAGAACATAGAATGTAAAGGACTGGGACTTGATCTACTCAGTGGTACCTATGTACTCGACGTTTGTTCTCAACTCCCCCTTCAGAAGTGACTGTAAAGGATGGATATATCACAGTAGATTGAGTTCTTCACTAGAGAAATGCAGAATGCACTGCTGGTGTGGCTAGTAGAGATGGCAAAATGTTTACTACATCATTACCAACCAAGTGCATcattttccttttctttttttttgggggggggggggggggggggggggcaggtaaaAGACCACAACTGCAAATTCAAGTCTTTAAAATACTAGCTGTTGAATACAACAAGACAATTTGGCACTCCCAACTTTAAATACAGGCTTTTTTGTTCTTATCCTGACACTATCCTAACTTGCTGAGAAAAACATGGTAACTAGATTTTGATTGGTTTGGCTGATGAAGATACTAATGAGTTTGTGCCTTTTTACTTACTTTTTGAACATTTCCTCAATTAAATTCAGTTTGGTGCTGGCTGTCTTCTTCTAGTTCCCTTTTCCACTGGCTGCTTGGAATGCATCTACACTTTATTCATATCTAGACATGTTAACCGGCAGCTCCTCCAGCTTACGTGCAGCTCTTTACTTCTGATGGCATCTTATGGGGAGCATCAGTGAATGGAGGAGAAAGTCAACAGATTGTTCTGGAAGACATTTCAACAGTGTTTTGGTGCTTTAGTTGGGTTCTACAACCCACCCTCTCTAAACATTGAAATATTTTCCCTGCTTCACCTACTAGTTTAGGGATAATAAATACTCATCATATATTTTTGTacaaattgtgaaaatgattgTACGAGAACGTAGTAGCATACATCTGGGGCTACGGTGGTACGTTTGGAATGATGAGAAAAATGTGATTCCTAATTACTGTGAAGAAAATATTGATACATTTCCAATGTCAATGTTTTTCTTTTAATCAAAGTAAATGTCAATCAATCAAGATTCCCAAACTAGCCAGTCCTCACTTTGTATACTGTAGTGCTGTTGTCATGGA
>TU885002
TGCGCTCCACAAACCTTTCTATGTTGCCATCCAGTGCACGGACAGAGTCTTGTGCAGTTCGCGACAGCTGGCCTTTGAACTGACATCAGATAGTCCACCAAGCAAAGTTGCAAATGGTGAATTCACCATTGAATTGGAACCAGTAGTCCGATACGATTGTACAGGTAGCCTACTTGAAAATTGCGCATTGTTCTTCAAGATCTGCAAAGTTGCAGCTACATCAGtggtCCTCAGCTCCAGACATGGGTGTGAAGGTGCTCCAGTGCTTCCCCTGGTACAGACGCTGTAAAGAGCGATGCAAGGCTAAACAGTGCCCCCCACCTGCAGTCCCCAGTGAGGAGATGAAGCCCCGCCTGTCGTCCACAGTGTCGTGTGGTAGCGAGGGCGAGAGCAGCAGCAGTCTGAGTGGCTCCCAGATCTACTTCTCCACCAAGGCTCGCCTCTCCTTCAGACACCAGATGGACAGCAACTTCAACGCAGTGGATGCCACCTGCTGAATAGATCAGCCCCGACGTGCCGAGTAGTCTTCAATAGGCATCAAACGGAAGAAAAAGGACTGAAATAGGGAGGGAATACCTGGGCTTGTTCGATAAGAAGCGCTTCCGTTGTGAAACATTTTTGCTACGGTGtaccctaatgaatacgaccctggcTTACAGTGCTGGGAATGACACTTTAGTTTCTACTGAGGCATCCCTCCTGTAATCATCACCATTGCCCAAAAATGAACTCTCGCCCCTCCACTATGATATCCATTATTATAGCTCAACAGAACATAGAATGTAAAGGACTGGGACTTGATCTACTCAGTGGTACCTATGTACTCGACGTTTGTTCTCAACTCCCCCTTCAGAAGTGACTGTAAAGGATGGATATATCACAGTAGATTGAGTTCTTCACTAGAGAAATGCAGAATGCACTGCTGGTGTGGCTAGTAGAGATGGCAAAATGTTTACTACATCATTACCAACCAAGTGCATcattttccttttctttttggggggggcaggtaaaAGACCACAACTGCAAATTCAAGTCTTTAAAATACTAGCTGTTGAATACAACAAGACAATTTGGCACTCCCAACTTTAAATACAGGCTTTTTTGTTCTTATCCTGACACTATCCTAACTTGCTGAGAAAAACATGGTAACTAGATTTTGATTGGTTTGGCTGATGAAGATACTAATGAGTTTGTGCCTTTTTACTTACTTTTTGAACATTTCCTCAATTAAATTCAGTTTGGTGCTGGCTGTCTTCTTCTAGTTCCCTTTTCCACTGGCTGCTTGGAATGCATCTACACTTTATTCATATCTAGACATGTTAACCGGCAGCTCCTCCAGCTTACGTGCAGCTCTTTACTTCTGATGGCATCTTATGGGGAGCATCAGTGAATGGAGGAGAAAGTCAACAGATTGTTCTGGAAGACATTTCAACAGTGTTTTGGTGCTTTAGTTGGGTTCTACAACCCACCCTCTCTAAACATTGAAATATTTTCCCTGCTTCACCTACTAGTTTAGGGATAATAAATACTCATCATATATTTTTGTacaaattgtgaaaatgattgTACGAGAACGTAGTAGCATACATCTGGGGCTACGGTGGTACGTTTGGAATGATGAGAAAAATGTGATTCCTAATTACTGTGAAGAAAATATTGATACATTTCCAATGTCAATGTTTTTCTTTTAATCAAAGTAAATGTCAATCAATCAAGATTCCCAAACTAGCCAGTCCTCACTTTGTATACTGTAGTGCTGTTGTCATGGA

Function

NR:

description
hypothetical protein EH28_02811

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU885001 False 1798 TUCP 0.44 4 17345478 17354347
TU885002 True 1772 TUCP 0.43 5 17345478 17354347

Neighbor

gene id symbol gene type direction distance location
LOC110531645 LOC106577780 coding downstream 6345 17330334 ~ 17339133 (-)
LOC110531643 LOC106577781 coding downstream 17864 17321431 ~ 17327614 (-)
LOC110531642 ylat1 coding downstream 27767 17306290 ~ 17317711 (-)
LOC110531640 LOC106577784 coding downstream 264686 17076930 ~ 17080885 (-)
LOC110532941 LOC106577784 coding downstream 281227 17050749 ~ 17064251 (-)
tm4sf5 tm4sf5 coding upstream 10636 17364983 ~ 17373648 (-)
tmem88b LOC106577776 coding upstream 35743 17390090 ~ 17397228 (-)
LOC110532943 LOC106577805 coding upstream 48031 17402378 ~ 17547902 (-)
LOC118966010 NA coding upstream 569723 17924070 ~ 17925788 (-)
LOC110531650 LOC106577756 coding upstream 652286 18006633 ~ 18129483 (-)
G776639 NA non-coding downstream 43014 17301809 ~ 17302464 (-)
G776635 NA non-coding downstream 48122 17297052 ~ 17297356 (-)
G776620 NA non-coding downstream 74371 17270823 ~ 17271107 (-)
G776446 NA non-coding downstream 121485 17223789 ~ 17223993 (-)
G776424 NA non-coding downstream 146336 17198874 ~ 17199142 (-)
G776701 NA non-coding upstream 60255 17414602 ~ 17415162 (-)
G776709 NA non-coding upstream 84319 17438666 ~ 17438944 (-)
G776715 NA non-coding upstream 104824 17459171 ~ 17466795 (-)
G776719 NA non-coding upstream 122736 17477083 ~ 17481116 (-)
G776652 NA other downstream 25105 17319615 ~ 17320373 (-)
G776461 NA other downstream 99681 17245434 ~ 17245797 (-)
G776355 NA other downstream 319665 17025380 ~ 17025813 (-)
G776340 LOC106577790 other downstream 330793 17010012 ~ 17014685 (-)
G776294 NA other downstream 479444 16865467 ~ 16866034 (-)
G776714 NA other upstream 104330 17458677 ~ 17463822 (-)
G776762 NA other upstream 239125 17593472 ~ 17594666 (-)
G776812 LOC106566110 other upstream 301247 17655594 ~ 17655980 (-)
G776814 LOC106600668 other upstream 301641 17655988 ~ 17656325 (-)

Expression


Co-expression Network