XLOC_026977 (fgfr1op2)


Basic Information

Item Value
gene id XLOC_026977
gene name fgfr1op2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1722899 ~ 1730920 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053246
GTAGGAACTGACCCGTTGCTGCTGATAAGGAATGACCTGCACATTAGAGAAGGTTCTGGCTGATGCCAAATCACTGGTGGAGAGACTCCGGGATCATGACAGTGCTGCAGAGATCCTGATTGAACAAACCACACTGCTCAACAAGAGAGTGGAGGCCATGAAACAGTATCAGGAAGAGATCGAGGTGTTAAACCAGGTTGCGAGGCATCGGCCACGCTCAACACTAGTCATGGGCATCCAACAGGAAAACCGGCAAATACGGGAACTGCAGCAAGAAAACAAAGAGCTGCACACGTCTCTGGAGGAGCATCAGTCTGCGCTGGAGCTGATCATGAGCAAATACAGAGAGCAAGTGTTTCGACTTCTGATGGCCAGCAAAAAAGAGGATCCCACCATCGTCACGCAGCTCAGAGAACAGCACACGAACGAGATGCAAGCGCACATCGAAAAAATCAACGAAATGGCCACGGTGATGAGGAAAGCCATCGAAGTTGATGAAGGACGACTGTGTGAGGATGAGGAGAGAATCAAACGCCTGGAGctgGAGAACAGTGGCCTGCGAGAGCTCCTGGGAATCAGTCGAGAAGCGTTTCTGCTGCTGAAGAGAGACGATACATCAGACAGCACATCTCTGTCGCCGCTGCTCACCAGCACAGACATCAGCCTGAGGAAGAGCTGAAGACAAAACCAGCATTCAGAGCTGCTCTACACTGCAGACAATATCCGATAACCAACAGCTTTATGcttgtgaattgcattgtgggatgttgatctctgctgtgTCGACAATTCAACTCTACGTTAACAAAGGggcatttattgacattttagtcgtatgatatagagaaataagtgtgtaaaataacagtaaatgtacTGGCGGTGTATTACAAGGCTTTTGTAgcctaatatacaacaccaacacagacaatatagcactgcaaactattacaaatgttcataaaagtcacttttacaaACTGTTCAAGATTAAAAGTTGCTGCAAGAAAGAtgaagatcccataatgcaagtcacaatcataaataaatggggaaaaataaaaacatgcatcacaaaatatgtaaaactgctaatttacggatatttgtttacagtgtacacaTCCCACAACCCACCAGTAcagtttcacacacactcaccgtcAGCCATTTGTCATGACGGCATCTCTCAAACACTGGGATTTGATGACTTTTCCATCTCTTCATCCTCACTGCTTCTGTCTGGGAACGTCACATGACCACGCTGACTGATTCAGCCACATGAAAACAATCATTTGAGGAATTATTAGCCGATTGTGAATGATTACTTTACCTGAACAGGAGACTTTGTGAAGGGAACGTCACGATGTGCCATTTTAAAGAAACCGCTCGTGTTGTTGCTTTGCTTGTTGTGTTTGTAACAGTGTTTTATGCGAGTGTGAGAGGAGGTAGCATTGAAAgtgaactattaaaaatgttgaactaA
>TCONS_00053247
GAACTGACCCGTTGCTGCTGATAAGGAATGACCTGCACATTAGAGAAGGTTCTGGCTGATGCCAAATCACTGGTGGAGAGACTCCGGGATCATGACAGTGCTGCAGAGATCCTGATTGAACAAACCACACTGCTCAACAAGAGAGTGGAGGCCATGAAACAGGTCAAATACTCTCTTTTACACTGACgttaagtttgttttatattcacacatttgttcagtgaTACGGCCTCTGTATTGTTTAACATGCTACACTGAATATTCGGTCAGAAActgcatgcaagtatgacttcagaacaacattagcactgtttaataTGATTCAATCTATTTGCAGGTTCACCGTCATCATTTCAGaacagtattatttgcaaactgtaAATATGGAAATCTTATTATCAGCCAATGATTATCAAAGCACAACACTATTCACAGTTGATCAaatggtgctaatgttgttttgaactcGTACTAATATacgatttcagaccgaatattataagtagtgtaaccccgccggtcctgcGCCACCCAACCCATTCTAAGCTGGTATCGACCCGGTGACcttttgcatgggagtcggttgctctaccaaggagggtaaagaccatggcctctagtgtctgccgctagagcacctttaagccccgttcacacagggcttcagcgtcaacgcttgactgaaggcgt

Function

symbol description
fgfr1op2 Predicted to be involved in response to wounding. Predicted to be located in cytoplasm. Orthologous to human FGFR1OP2 (FGFR1 oncogene partner 2).

GO:

id name namespace
GO:0009611 response to wounding biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7451 Predicted to be involved in response to wounding. Predicted to be located in cytoplasm. Orthologous to human FGFR1OP2 (FGFR1 oncogene partner 2).

Ensembl:

ensembl_id ENSDARG00000009657

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053246 False 1486 mRNA 0.44 6 1722899 1730920
TCONS_00053247 True 690 processed_transcript 0.44 2 1722903 1725794

Neighbor

gene id symbol gene type direction distance location
XLOC_026976 NA coding upstream 33542 1686486 ~ 1689357 (+)
XLOC_026975 NA coding upstream 37390 1684028 ~ 1685509 (+)
XLOC_026974 scaf11 coding upstream 79798 1619584 ~ 1643101 (+)
XLOC_026973 slc38a2 coding upstream 105002 1600034 ~ 1617897 (+)
XLOC_026972 NA coding upstream 129087 1576850 ~ 1593812 (+)
XLOC_026978 NA coding downstream 1907 1732827 ~ 1735224 (+)
XLOC_026979 med21 coding downstream 26542 1757462 ~ 1759555 (+)
XLOC_026980 pmpcb coding downstream 30109 1761029 ~ 1771308 (+)
XLOC_026981 NA coding downstream 94683 1825603 ~ 1827105 (+)
XLOC_026982 NA coding downstream 112049 1842969 ~ 1845156 (+)
XLOC_026969 NA non-coding upstream 271844 1447055 ~ 1451055 (+)
XLOC_026967 NA non-coding upstream 310766 1400312 ~ 1412133 (+)
XLOC_026983 NA non-coding downstream 114710 1845630 ~ 1852654 (+)
XLOC_026984 NA non-coding downstream 126563 1857483 ~ 1862512 (+)

Expression


Co-expression Network