XLOC_026978


Basic Information

Item Value
gene id XLOC_026978
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1732827 ~ 1735224 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057507
TAGGTGTTGTGGCACGAATTACAACTTTATTAAGcatttaattttatacaaaacAGACATAATAATACACGCGGCTACCGTTTAAAAACATCATAGACAGTAAAGCACGTTTTAAATGCTTTACAACACAAGTAAGAAGTTTGCTTCTGTgagagatacaaaaaaaaaaaaaagacaaatcacAAGAAGAAACCCTGAGAGGAGATCAGAAGTTGACCGTAAGTTCACAGAGCTGCGGTCTGTAAGCTTTGCGTCTCAATAAGAGCTACATGTCcatttataaagcatttattaactcAATGTTACATTTAAAATCCGCATTAACAAGTGCTTTACACAAATGAAGTGAAGCAGCAATCACATCCCCACAGGAACGCAGTCAAAATAAGCTCATTACTTCCATCATCTGGAAATAATTAATCGCTTCGTCGTAGGTAAAACACACATAAATCAGCCGTAGAGGCTTACAGTGGCTATTAATGAACACTGGTTCATTCGGTCTGCAGTGGCAGTGTGTTATACATTCATTTCAATGGTAAACTGGGTGTCTTTAAAAACAAActcactctgacaggcacatggtgGTGCGGTTATATTAACCAGATGCAATTAAAAATAGgacaaaacagttttaaaaaagtgGCACGTCTACCATGTCTATCGTCTctcaaaacatgctaaaatgcatCTAAAATCAGGTTTATGCTAAATATGCTGGAGGTCAGTAGCTTCAAGtggatcgttcacccaaaaaagaagaACTATTGACTCTCTTTTAAGTGGTAAACACAAAAGTAAATCTTTTGAAGGGTGttagaaaacctgtaaccattgacttccatagaaggaaaaactaCAGGTTtcttcaaacattcttcaaaatatcttcttttgagttcaacagaagaaactcaaactgctttacaagagtaaatgatggcagaatgttcATTTCTGCGTGAACTAACCCCTAAATGAGACTAAACGTGAGTTCAGCAATGTGCTCAAGTtctgattaaagggatagttcacccagaaatattttatttcctcactatttactctcccttaagtgGTAAACACAAAAAGTAGAttatttgaagaatgctaaaaacctgtaaccattggcttttcCATAGCCGAAACAGCTAAGCAAGTCAAGTACAGGTTTGCAGcattcttcaagatatcttcgtttgagctcaacagaagaaactcaaactgcTTTACCAGAGTAAATGATAGCAGAATGTTCATTTCTGCGTGAACTAACCCCTAAATGAGACTAAACGTGAGTTCAGCAATGTGCTCAAGTtctgattaaagggatagttcacccagaaatattttatttccttactatttactctcccttaagtgGTAAACacaaaaagtagatattttgaagaatgtttaaaacctgtaaccattgacctttcCATAGCAGAAACAACTAAGCAAGTCAAGTACAGGGAgggtaaatgatggcagaatgttcatttttgcgtgaactacccctttaatgagACTAAATGTGATCAAGCActgggaaaaaaacacacaaaacacacaccagTGCACATTATCattagtgttgtgtgtgtgtttgagttttgCAACCTTTCTCATTGCCGTGTCCGAGTCTCCAGGCTCTATAAAATCGAGCTCAGTCCTCATATTTCACACTACAGActtgtatatgaagagttcagacgcAAAAATCtctgaaatgttcttttaaaatgagcatttctaTGTTATTTCATTGAAAGGCAATGAACTTATCCATCACTATAAGAGTAAAATGACCGAGCCTAAACACAAGAGATGGAGAAAATGCTCATATTAGCAGAAAATCTCGAGGTttctgcatctaaactcttcatatagaGTCAAATGTTAAAGCAGGAGCGGTGTGGTTTCTCCGGCCGGTTCTGCACGGCGTGTAAGTTGACGGATACGTCCCATTATTTGGGCTGGTAATGATGGTTTGTGGTAGCTGGGATCCAGAACGTTGGTTTTCCGGCGTTCTCGCTCCTGCCTCCACAACACATACGGGCTTGGTGGGAAAAATGGGCGAGACTTTTCTCGATAGAGCTGCACAATGATCCCCGAAACCCCCAGAACCACCCACACCGTGATCATCACGAAATCTGGAGAGATGATGATGGGAAACAGCAGACATGACCAATGAGTTTGAGTGATTTAAGTAATGTTCGGTCTGCAAACATTTTTACCCATTTATTCACAATAAATTGATTACAAGTAGATGTAATCCACAACcaaataaccattgacttctaaagTATTTGTTATGGTTGATCTCAATGctta
>TCONS_00057508
CACGAATTACAACTTTATTAAGcatttaattttatacaaaacAGACATAATAATACACGCGGCTACCGTTTAAAAACATCATAGACAGTAAAGCACGTTTTAAATGCTTTACAACACAAGTAAGAAGTTTGCTTCTGTgagagatacaaaaaaaaaaaaaagacaaatcacAAGAAGAAACCCTGAGAGGAGATCAGAAGTTGACCGTAAGTTCACAGAGCTGCGGTCTGTAAGCTTTGCGTCTCAATAAGAGCTACATGTCcatttataaagcatttattaactcAATGTTACATTTAAAATCCGCATTAACAAGTGCTTTACACAAATGAAGTGAAGCAGCAATCACATCCCCACAGGAACGCAGTCAAAATAAGCTCATTACTTCCATCATCTGGAAATAATTAATCGCTTCGTCGTAGGTAAAACACACATAAATCAGCCGTAGAGGCTTACAGTGGCTATTAATGAACACTGGTTCATTCGGTCTGCAGTGGCAGTGTGTTATACATTCATTTCAATGGTAAACTGGGTGTCTTTAAAAACAAActcactctgacaggcacatggtgGTGCGGTTATATTAACCAGATGCAATTAAAAATAGgacaaaacagttttaaaaaagtgGCACGTCTACCATGTCTATCGTCTctcaaaacatgctaaaatgcatCTAAAATCAGGTTTATGCTAAATATGCTGGAGGTCAGTAGCTTCAAGtggatcgttcacccaaaaaagaagaACTATTGACTCTCTTTTAAGTGGTAAACACAAAAGTAAATCTTTTGAAGGGTGttagaaaacctgtaaccattgacttccatagaaggaaaaactaCAGGTTtcttcaaacattcttcaaaatatcttcttttgagttcaacagaagaaactcaaactgctttacaagagtaaatgatggcagaatgttcATTTCTGCGTGAACTAACCCCTAAATGAGACTAAACGTGAGTTCAGCAATGTGCTCAAGTtctgattaaagggatagttcacccagaaatattttatttcctcactatttactctcccttaagtgGTAAACACAAAAAGTAGAttatttgaagaatgctaaaaacctgtaaccattggcttttcCATAGCCGAAACAGCTAAGCAAGTCAAGTACAGGGAgggtaaatgatggcagaatgttcatttttgcgtgaactacccctttaatgagACTAAATGTGATCAAGCActgggaaaaaaacacacaaaacacacaccagTGCACATTATCattagtgttgtgtgtgtgtttgagttttgCAACCTTTCTCATTGCCGTGTCCGAGTCTCCAGGCTCTATAAAATCGAGCTCAGTCCTCATATTTCACACTACAGActtgtatatgaagagttcagacgcAAAAATCtctgaaatgttcttttaaaatgagcatttctaTGTTATTTCATTGAAAGGCAATGAACTTATCCATCACTATAAGAGTAAAATGACCGAGCCTAAACACAAGAGATGGAGAAAATGCTCATATTAGCAGAAAATCTCGAGGTttctgcatctaaactcttcatatagaGTCAAATGTTAAAGCAGGAGCGGTGTGGTTTCTCCGGCCGGTTCTGCACGGCGTGTAAGTTGACGGATACGTCCCATTATTTGGGCTGGTAATGATGGTTTGTGGTAGCTGGGATCCAGAACGTTGGTTTTCCGGCGTTCTCGCTCCTGCCTCCACAACACATACGGGCTTGGTGGGAAAAATGGGCGAGACTTTTCTCGATAGAGCTGCACAATGATCCCCGAAACCCCCAGAACCACCCACACCGTGATCATCACGAAATCTGGAGAGATGATGATGGGAAACAGCAGACATGACCAATGAGTTTGAGTGATTTAAGTAATGTTCGGTCTGCAAACATTTTTACCCATTTATTCACAATAAATTGATTACAAGTAGATGTAATCCACAACcaaataaccattgacttctaaagTATTTGTTATGGTTGATCTCAATGctta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057507 False 2334 lncRNA 0.38 2 1732827 1735224
TCONS_00057508 True 2017 lncRNA 0.38 2 1732839 1735224

Neighbor

gene id symbol gene type direction distance location
XLOC_026977 fgfr1op2 coding upstream 1907 1722899 ~ 1730920 (+)
XLOC_026976 NA coding upstream 43470 1686486 ~ 1689357 (+)
XLOC_026975 NA coding upstream 47318 1684028 ~ 1685509 (+)
XLOC_026974 scaf11 coding upstream 89726 1619584 ~ 1643101 (+)
XLOC_026973 slc38a2 coding upstream 114930 1600034 ~ 1617897 (+)
XLOC_026979 med21 coding downstream 22238 1757462 ~ 1759555 (+)
XLOC_026980 pmpcb coding downstream 25805 1761029 ~ 1771308 (+)
XLOC_026981 NA coding downstream 90379 1825603 ~ 1827105 (+)
XLOC_026982 NA coding downstream 107745 1842969 ~ 1845156 (+)
XLOC_026983 NA coding downstream 110406 1845630 ~ 1852654 (+)
XLOC_026972 NA non-coding upstream 139015 1576850 ~ 1593812 (+)
XLOC_026969 NA non-coding upstream 281772 1447055 ~ 1451055 (+)
XLOC_026968 NA non-coding upstream 324786 1405603 ~ 1408041 (+)
XLOC_026984 NA non-coding downstream 122259 1857483 ~ 1862512 (+)
XLOC_026985 NA non-coding downstream 130336 1865560 ~ 1866450 (+)
XLOC_026967 NA non-coding upstream 320694 1400312 ~ 1412133 (+)

Expression


Co-expression Network